AMCG00008292


Basic Information

Item Value
gene id AMCG00008292
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50366444 ~ 50403958 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008292
aagcCCAAAGAAATCATTCCCACAAGGGGCTGGAATTACAGCACTAGCTTAAGTTGCGTCatccagCCCATAGGGTACGGATATCCGGACTGCTTGGTGCCCCAGCCTTGCCGGGAATGTGGGTCTGCTACAGCTACAGCCCCGCTGACGTCCGAGGAGCTTGCGGTCACAGCAACACCAGTTATCACGGGGATAGTCTTTCACAGCTACTGCAAGAAGAAGCCTATATCTCATGAGTCCAGCCTGGCCACCTGTCTGGCCAGCTGTAGCCGCCCCTCCatctccccccaccctcctgcGGAGTTCTGGTTCGGCGCGACAGCTGTCGTTCTGGGGCCTCTCGATGAATTCCTCCACCTGGGGGTCCTCGGGTTTAGTTTCCGAGGGGAAGAATGCGATAGGCTCCGTCTTGCCATTGGGAGCGTCCACTTCCATGCGTttggggggccgggggggggggggcTTCTCACCAGTAGGAGGCAGGTGTCCACAAGACAGAAGGTTCCGGAGCGCCCTATGCCTGCGCTGCAGTGGACCACCACAGGGCCCTGCTCTGGGCCCAGGCAGCCCGACTCCCGCACCTTGAACAGGAAATTGAGGAAGGAGGCAGGGGACTCGGGCACCCCAAAGTCAGGCCAAGTGGTG

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008292 True 645 mRNA 0.61 7 50366444 50403958

Neighbor

gene id symbol gene type direction distance location
AMCG00008291 NA coding upstream 6579 50358987 ~ 50359865 (+)
AMCG00008283 NA coding upstream 485092 49879979 ~ 49881352 (+)
AMCG00008281 NA coding upstream 769651 49587067 ~ 49596793 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding upstream 806364 49549906 ~ 49560080 (+)
AMCG00008272 NA coding upstream 894829 49469289 ~ 49471615 (+)
AMCG00008294 NA coding downstream 47352 50451310 ~ 50460054 (+)
AMCG00008296 NA coding downstream 158796 50562754 ~ 50582183 (+)
AMCG00008304 NA coding downstream 929345 51333303 ~ 51336685 (+)
AMCG00008309 NA coding downstream 1131512 51535470 ~ 51542896 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding downstream 1148648 51552606 ~ 51560087 (+)
G30010 ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074 non-coding upstream 55235 50308100 ~ 50311209 (+)
G30017 NA non-coding upstream 92261 50273735 ~ 50274183 (+)
G30016 NA non-coding upstream 98994 50267223 ~ 50267450 (+)
G29991 NA non-coding upstream 210182 50155704 ~ 50156262 (+)
G29990 scrt2,LOC106572483,LOC103139108 non-coding upstream 217721 50147649 ~ 50148723 (+)
G30012 NA non-coding downstream 41899 50445857 ~ 50448965 (+)
G30073 NA non-coding downstream 124575 50528533 ~ 50530747 (+)
G30078 NA non-coding downstream 131816 50535774 ~ 50535987 (+)
G30083 NA non-coding downstream 151426 50555384 ~ 50555589 (+)
G30099 NA non-coding downstream 346422 50750380 ~ 50752307 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 10040 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 507868 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 947698 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1071085 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1195427 49163816 ~ 49171017 (+)
G30166 NA other downstream 1022623 51426581 ~ 51428055 (+)
G30232 NA other downstream 1696804 52100762 ~ 52101524 (+)
G30299 NA other downstream 1974371 52378329 ~ 52378776 (+)
G30300 NA other downstream 1977383 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 2587327 52991285 ~ 53087480 (+)

Expression


Co-expression Network