AMCG00008293 (ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952)


Basic Information

Item Value
gene id AMCG00008293
gene name ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50397739 ~ 50406216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008293
TTCCAAGAGGAAAAGGAGACCCCTGCAAGATCTTAAATACCCTGAAGAGCAACGTGCTGTTTCTGCTGTAAATGTCTAGGAAGGGATGGTTGATTAATCACGGTggtggttattttttttttatttcttcctcaCAGGGCCCATTACCTAACACGTGTGGGCAGTTCTGGGAGATGGTGTGGGAGCAACGCAGCCACGGCGTAGTGATGCTGAACCGGGTCATCGAGAAGGGTTCGGTAAAGTGTGCCCAGTACTGGCCCCAGCgagaggagaaggaggtggTATTTCAGGACACCAGTTTCAGGCTAACTCTAGTGTCCGAGGACGTCAAGTCATACTACACTGTGCGTCAGCTGGAGCTGGAGAATTTGGAGACCCAGGAGACCAGGGAGATCCTTCATTTCCACTACACCACTTGGCCTGACTTTGGGGTGCCCGAGTCCCCTGCCTCCTTCCTCAATTTCCTGTTCAAGGTGCGGGAGTCGGGCTGCCTGGGCCCAGAGCAGGGCCCTGTGGTGGTCCACTGCAGCGCAGGCATAGGGCGCTCCGGAACCTTCTGTCTTGTGGACACCTGCCTCCTACTGATGTCTAAGCGTAAAGACCCGTCCTCTGTGCGGATTCGGGACATCCTTCTGGAAATGAGACGCTACCGCATGGGGCTGATCCAGACTGCTGACCAGCTGAGATTCTCCTACCTCGCAGTCATTGAGGGTGCCAAGTGGATCATGGGAGACACATCTGTGCAGGAATCCTGGAAGGAGCTTTCCAATGAGGAGGACGATCCCCCGGAGTtcacgcccccccccccccggccccccaaACGCATGGAAGTGGACGCTCCCAATGGCAAGACGGAGCCTATCGCATTCTTCCCCTCGGAAACTAAACCCGAGGACCCCCAGGTGGAGGAATTCATCGAGAGGCCCCAGAACGACCTGAGAATTGAAAGCTGTCGCGCCGAACCAGAACTCCgcaggagggtggggggagatGGAGGGGCGGCTACAGCTGGCCAGACAGGTGGCCAGGCTGGACTCTGGGACCAGAATGCAGAGGGACAGAAGACCAAGGAGCAGGGGGCAGGGGGCGCTGCAGGAGCAGCAGTATTGGAGGAAGACGCAGAAGGTCCACTGGGAGCTTGGAAACCATTGTTGGcaaatgtgtgcttgtgtacAGCCCTGGCCCTTGGTGCTTACATCTGTTACAGGGCCTGCTTCCACTGACCTCTCCAccttctctatctctctctctgtctctcgctctccttcTTGACGCATAAAAACAAGGCCAGTCAGCCAGGCCATCGACTTGGAATCCATCCACCCCAT

Function

symbol description
ptpn1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in liver. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PTPN1 (protein tyrosine phosphatase non-receptor type 1).

NR:

description
tyrosine-protein phosphatase non-receptor type 1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008293 True 1328 mRNA 0.56 6 50397739 50406216

Neighbor

gene id symbol gene type direction distance location
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding downstream 84304 50308778 ~ 50313435 (-)
AMCG00008290 slc52a3 coding downstream 104376 50292332 ~ 50293363 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding downstream 241874 50147817 ~ 50155865 (-)
AMCG00008286 NA coding downstream 278433 50116033 ~ 50119306 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding downstream 307972 50087093 ~ 50089767 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding upstream 44871 50451087 ~ 50518539 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 143849 50550065 ~ 50559321 (-)
AMCG00008300 nfatc2 coding upstream 385860 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 404163 50810379 ~ 50813806 (-)
AMCG00008302 atp9a,LOC106567116 coding upstream 434044 50840260 ~ 50916380 (-)
G30065 NA non-coding downstream 11180 50386260 ~ 50386559 (-)
G30061 NA non-coding downstream 41391 50353895 ~ 50356348 (-)
G30059 NA non-coding downstream 63134 50328270 ~ 50334605 (-)
G30058 NA non-coding downstream 83314 50314172 ~ 50314425 (-)
G30053 NA non-coding downstream 130304 50267076 ~ 50267435 (-)
G30070 NA non-coding upstream 39503 50445719 ~ 50448970 (-)
G30086 NA non-coding upstream 195241 50601457 ~ 50602050 (-)
G30091 NA non-coding upstream 207372 50613588 ~ 50613903 (-)
G30094 NA non-coding upstream 248003 50654219 ~ 50654513 (-)
G30096 NA non-coding upstream 253728 50659944 ~ 50660176 (-)
G30054 NA other downstream 123556 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 343637 50053825 ~ 50054102 (-)
G29928 NA other downstream 492650 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 860458 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 1144495 49175725 ~ 49253244 (-)
AMCG00008298 NA other upstream 117771 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 1923020 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1974840 52381056 ~ 52384567 (-)

Expression


Co-expression Network