AMCG00008295 (LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112)


Basic Information

Item Value
gene id AMCG00008295
gene name LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50451087 ~ 50518539 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008295
ATGTTTTATGAAGGTTGTCCTCACGTCTCAGGACATTGGACTGCAGGCTGCGTGATGGGGGGAACGAAGAGCAAGCCCAAGGATCCAGGCCAGCGGTCACGGAGTCTGGATGGAACCGGATGTGGGGTCTCCCATCACCCTGCCCTGAGTCCTGGGCAGCAGACCCTCACCCCAAACCGCAGCCCTGCTGTCGATGTCTCCCGGCGCACCAACCAGCCGCACACCAACAATGCAGAGCTCGCCCTCTTCGGAGGAGTGGAATCCGCCGGGAGCATCACTTCCCCAAATAGAGGAGGTGTCACCACCTTTGTGGCGCTGTACGACTACGAATCGCGGACGGCGTCAGACCTTTCTTTCAAGAAGGGCGAGAGACTGCAAATCGTCAACAACACGGAAGGGGACTGGTGGCTTGCGCGCTCCCTGACTACTGGAGAAAGTGGTTACATTCCCAGCAATTATGTTGCTCCTTCAGACTCCATCCAGGCTGAAGAGTGGTACTTTGGGAAGATCACGCGCAGGGATTCTGAGAGGCTCTTACTGAACCTGGAAAACCGAAGGGGAACTTTCTTGGTGAGGGAGATTCTTGACTACGACAACACGAAAGGCCTGAATGTCAAACACTACAAAATCCGCAAACTGGACAGTGGAGGGTTCTACATTACATCTCGCACTCAGTTCAGCAACCTGCAGCAGCTTGTCAGTCACTACCGCAaACATGCAGATGGTCTGTGTCACACTCTGACAGAGGTGTGCCCTGTCCTGAAGCCCCAGACTCAGGGTTTGGCTCGGGATGCCTGGGAGATTCCCCGTGAGTCCCTGCGACTGGATGTCAAACTGGGCCAGGGCTGCTTTGGGGAGGTCTGGATGGGAACATGGAATGGGACAACACGGGTAGCAATCAAAACCCTGAAGCCTGGGACTATGTCTCCAGAGGCTTTCCTGCAGGAGGCCCAGGTGATGAAGAAGCTGCGTCATGAGAAGCTGGTGCAGTTATATGCAGTGGTCTCAGAAGAGCCCATCTACATTGTCACGGAGTACATGGGCCAAGGCAGCTTACTGGACTTCCTCAAGGGCGACATGGGCAAAATGCTGCGACTACCCCAGCTAGTGGATATGGCGTCACAGATTGCAGCAGGAATGGCCTATGTGGAGAGGATGAACTATGTGCACAGGGACCTGAGGGCTGCCAACATCCTGGTGGGCGACAATTTAGTATGTAAAGTGGCTGACTTCGGACTGGCGAGACTCATTGAGGACAATGAGTACACGGCCAGACAGGGTGCCAAGTTCCCCATTAAGTGGACTGCTCCAGAGGCAGCACTATACGGCCGGTTCACAATCAAATCAGATGTCTGGTCATTTGGAATCTTGCTGACAGAACTGGCCACAAAAGGCAGAGTGCCCTACCCAGGGATGGTGAATCGGGAGGTGCTAGACCAGGTGGAGCGGGGGTACCGGATGCCATGCCCAGCCGAGTGCCCCGAGTCTCTGCACGAGCTCATGCTGACATGCTGGCGCAAGGAGGCGGAGGAGCGTCCCACATTTGAGTATCTGCAGAGCTTCCTGGAGGACTATTTCACCTCCACAGAGCCCCAGTACCAGCCTGGAGAAAACCTataaggggggtgggggcagcaAGGCAACCAACCTGGCAAACTCCCAGTACCCCCTTCCTCAGTACCCTCTGCTCCGGCGAGCCACTGNNNNNNNNNNCCCCCCTCCCCC

Function

NR:

description
PREDICTED: proto-oncogene tyrosine-protein kinase Src

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0007155 cell adhesion biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05704 SRC; tyrosine-protein kinase Src

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008295 True 1725 mRNA 0.56 13 50451087 50518539

Neighbor

gene id symbol gene type direction distance location
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding downstream 44871 50397739 ~ 50406216 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding downstream 137652 50308778 ~ 50313435 (-)
AMCG00008290 slc52a3 coding downstream 157724 50292332 ~ 50293363 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding downstream 295222 50147817 ~ 50155865 (-)
AMCG00008286 NA coding downstream 331781 50116033 ~ 50119306 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 31526 50550065 ~ 50559321 (-)
AMCG00008300 nfatc2 coding upstream 273537 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 291840 50810379 ~ 50813806 (-)
AMCG00008302 atp9a,LOC106567116 coding upstream 321721 50840260 ~ 50916380 (-)
AMCG00008301 NA coding upstream 405513 50924052 ~ 50936800 (-)
G30070 NA non-coding downstream 2117 50445719 ~ 50448970 (-)
G30065 NA non-coding downstream 64528 50386260 ~ 50386559 (-)
G30061 NA non-coding downstream 94739 50353895 ~ 50356348 (-)
G30059 NA non-coding downstream 116482 50328270 ~ 50334605 (-)
G30058 NA non-coding downstream 136662 50314172 ~ 50314425 (-)
G30086 NA non-coding upstream 82918 50601457 ~ 50602050 (-)
G30091 NA non-coding upstream 95049 50613588 ~ 50613903 (-)
G30094 NA non-coding upstream 135680 50654219 ~ 50654513 (-)
G30096 NA non-coding upstream 141405 50659944 ~ 50660176 (-)
G30108 NA non-coding upstream 231882 50750421 ~ 50753174 (-)
G30054 NA other downstream 176904 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 396985 50053825 ~ 50054102 (-)
G29928 NA other downstream 545998 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 913806 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 1197843 49175725 ~ 49253244 (-)
AMCG00008298 NA other upstream 5448 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 1810697 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1862517 52381056 ~ 52384567 (-)

Expression


Co-expression Network