AMCG00008298


Basic Information

Item Value
gene id AMCG00008298
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50523987 ~ 50528036 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008298
ATGGCCACGGAACTGGACCTTTCGCCCCCGGACGTCCCGGAGCCGACCTTCCTGGAAAGTGTCCTGCGCTACGGCCTGTTCCTGGGCGCCCTGTTCCAGCTTGTCTGCATCCTTGCCATAATTATCCCTTCTTCCAAGGCACACGACCAGGAGGCTGAACCCCATGATATGCGCGGCGCTGAGCAGAGCCGAAAACCCAAAGGGCCTTTGCCCCAGGTTCGACAGAAGCCAAAGAAAGAGAGCAAAAAGAAGAGATGA
>TU37623
ACTGTATTTCCTGTAGGATCTTACTGAATGAAATCACACAGACGTAGGTCCATCTAGAGCTTGAGACCATTTGAAAGGGCGTTGTGGCCGCACTGCAGGGAGGTCCAGATCACAGCAGCACTCAGGAGCCATGGCCACGGAACTGGACCTTTCGCCCCCGGACGTCCCGGAGCCGACCTTCCTGGAAAGTGTCCTGCGCTACGGCCTGTTCCTGGGCGCCCTGTTCCAGCTTGTCTGCATCCTTGCCATAATTATCCCTTCTTCCAAGGCACACGACCAGGAGGCTGAACCCCATGATATGCGCGGCGCTGAGCAGAGCCGAAAACCCAAAGGGCCTTTGCCCCAGGTTCGACAGAAGCCAAAGAAAGAGAGCAAAAAGAAGAGATGAAGTGCTACAAGACATGTGCTTGTGTATAAGGGAGGGCAGGGGAGGGGGTTGTGTGGAGCCAAgatgacgtgtgtgtgtgagtgagtgagtacaGATCCAGATCCCTAGTAAAAAAGTGATAGTTCTAGAAGTTTGGAGTTCGACATTGCCTCTGTCTACATAAGTGGAGGCAGCGGAAAAAGCACGTCGGTGGGACAAAGGATGGAAAATCACATCTCTCCAGCACTCCAGTTCATATGCTTTCCAGCAAGGTATCCCGTTCAGGAAAGAGATCTCTCAGGTGGTTAAAGAGTTAACTTTCTGCCTAGTTGCTGCATGGCTCCCTTCTTAAAATTCCAAGAATGTGGGGGAAAGCTGAACTCCAGGGCACAGAATGAACCCTTTCACCACCAAATCCACAAACTGTATCTCACTGTACCATGTGCTGGTTCTGAACCCTGTAACTTAAATTTATCATGTGTGTAAAAGCTTTATCCAATTAACACGGCACTGCTCCTTTGGTAGTTGGAGGCTGAAAGTTGTCTTTATTTGCATCCCACCCACTTTAATCGTTAATCGTGGCgtaagtttttttgttttgttttgtttttactaacaATGGTCTATTCTTCACTGTCAGTTAGTACTGCACTCAAAATCTGGAAATGAAACCAAACTCCCTTTACACAAGCTTTCCTGAAGTATTTAAAGTGTTTCCATGGGTTTATCGCTTTCTGTTTGAACAAGTTCATGAAACACTCCCCTGCCCACACACCCACGTCTCATTGCattaattatttgctttatttccgGTATGTGTTTTCACCCTACAAATACAGATACTTATTCGAGCAGAAGACTCCAATCCTGGTGTGGGAGGGCTGCAATCGAGCACGTGTTACAGATCACCTTTAAACCATCGATTTATATGGACTTAGGACACATTTAATGctaatcaattaagcaggtcCTTTGATAAATTCTGTCACTTGTAGATCATTTGGATCTCCAGAACAGCCAATCAGGACCTATGTTCTTTTAATTGAACAAGACTCTTGCTTTATTGATCAATAACAAAccagtgtttaaaaatgatgaCTTATCAGACTAACTTAACTGGGacattcacttaaaaaaaaaaaaaaaaaaccgaaTGGTAATGTGATGTAATATAGTTACGTTCAAAATGGCATATTAAGGTCACCAACCATTCATGCAGCTACAATAAGTATTTGCAAACCATGCCTTGCATTGTATCAATCACACTACTGCATACACATTTAACTGACAACTCCAAAAAATGCTTTAAGTTGatcaaaagcttttaaaattaatgtgcaggatttatttattt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008298 False 258 mRNA 0.58 2 50525320 50527378
TU37623 True 1721 TUCP 0.43 3 50523987 50528036

Neighbor

gene id symbol gene type direction distance location
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding downstream 5448 50451087 ~ 50518539 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding downstream 117771 50397739 ~ 50406216 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding downstream 210552 50308778 ~ 50313435 (-)
AMCG00008290 slc52a3 coding downstream 230624 50292332 ~ 50293363 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding downstream 368122 50147817 ~ 50155865 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 22029 50550065 ~ 50559321 (-)
AMCG00008300 nfatc2 coding upstream 264040 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 282343 50810379 ~ 50813806 (-)
AMCG00008302 atp9a,LOC106567116 coding upstream 312224 50840260 ~ 50916380 (-)
AMCG00008301 NA coding upstream 396016 50924052 ~ 50936800 (-)
G30070 NA non-coding downstream 75017 50445719 ~ 50448970 (-)
G30065 NA non-coding downstream 137428 50386260 ~ 50386559 (-)
G30061 NA non-coding downstream 167639 50353895 ~ 50356348 (-)
G30059 NA non-coding downstream 189382 50328270 ~ 50334605 (-)
G30058 NA non-coding downstream 209562 50314172 ~ 50314425 (-)
G30086 NA non-coding upstream 73421 50601457 ~ 50602050 (-)
G30091 NA non-coding upstream 85552 50613588 ~ 50613903 (-)
G30094 NA non-coding upstream 126183 50654219 ~ 50654513 (-)
G30096 NA non-coding upstream 131908 50659944 ~ 50660176 (-)
G30108 NA non-coding upstream 222385 50750421 ~ 50753174 (-)
G30054 NA other downstream 249804 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 469885 50053825 ~ 50054102 (-)
G29928 NA other downstream 618898 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 986706 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 1270743 49175725 ~ 49253244 (-)
AMCG00008318 NA other upstream 1801200 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1853020 52381056 ~ 52384567 (-)

Expression


Co-expression Network