AMCG00008301


Basic Information

Item Value
gene id AMCG00008301
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50924052 ~ 50936800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008301
GCATTTCTACTTGAAGGGCTAATTTCCCAACTCGAAGAATttgttgtaaagaaaaaaaaatattgttactATTTTGCTCCCGATGGTTGGACCATGTCGAGGCGCAAGCAAGCTAAGCCGCAGCACATCAACTCCGAGGAGCCCGGTTCGGCAGAGAATGggGTTCTGCAAGAAAGCCCACCGGAAGAAGAAGGCAGCAAGGCGAAGAGGGTCCGCATGGAAGAGACCAGTGTTTGTGACAGATGCTGTGCAGAGTTCTTCGACCAGTCAGAGTTCTTGGAGCATCAGAAAAATTGCACTAAAAGTCAGCAGGTCCTCATTATGAAGGAGGGGGAAGGAGGGATTTTGCCTGACTTTCCACGGGGTCCCCGAGAGGGCTTCCCTGGGGAGCAGCAGGAAGGCCCATCCTGCAATGGGGGACAGCCTGATAACAACCGAGTCCAGCTGGCAGAGAGGATGGAGCATGAGGTAGAAATGAATGGGGCAGATCCCCAGAAACGACCGCTACACTCTGAAATGTCTGCCAGCCCAAACATGAGATATTTGCCCGGccccaaaacacaaaacactaatGTAACATTAGAGACTATGACCAGCACTAAAGTGGCTGTCACTCAGCATTCATCCAACGACAAGCCTTCCCAGTCACTAGCCAGCCTGAATGCCATCCCTACAATCCTTGAGCAGTTAGTGAGTttgcagcaacagcagctgcagcaaaTTCAACTGACTGAACAGATTCGCATTCAGGTGGCTATGATGGCTCCCCATGGCCTTCACTCGTCTATAAGTGCAGCTGTAGATCCCTTGAAAGCTCTCGGCGCTCACTTGTCTCAACAgctttctgctgctgctgccttgATTGGGAAAAGAACTGGTACTCAAAGCCTTTCCCTTGAAAGTCTGAAACAAGGAAAGCTACCTCATCCCAACAATGTTCCTGCATCTCTATCTGGAAGTGGTGGAATTATGGCCTCCAAATCAGATGGCTCGAAATCTCTGCCCAACTTGGCCCCCCGTATTCCGACATTGTTGCCTCATTCACCTGGGGCCCTAGCTTTCcagaaccctttcactgccatTTCAGCTGGTCTGGATCCCATGAAAAAGGGTAAAGGCAAGCCTCCCAATATCACAGTAGAACCAAAGACCGGGTCGGAGGAGCCTCTGTTTAAGCACAAGTGCAAATTCTGTGGCAAGGTGTTCGGAAATGACAGTGCTCTTCAGATCCACCTGCGATCTCACACCGGAGAAAGGCCGTACAAATGCAATATCTGTGGAAACCGATTCACCACCAAAGGAAATCTCAAAGTGCACTTCCAGAGGCACAAAGAGAAGTATCCTCATATCCGCATGAATCCCCACCCTGTGCCTGAGCACCTTGACAATATCCCCACAAGCAGCGGAATTCCCTATGGGATGTCAATGCCTCCGGATGAGTCCAACTTTGTGGACAGTAAACCAGTGCTTGGATTGCCTGCTTCCACTAGCTTCCAGCCCCCCATGCTGCAGAGCCTCAAACCCTCCCAGGAAAGTTCCCTGGGGAGTGAACCTTCTTCCCAAAGACCATCGTCTTCTGGGAGCGATGGTGCATCCATTTCCTCCAGCATGTTCAATCAGGAAATGTCCTCGGAGCAGAATCTGGAATCCCCTGAAGGTTTAGGTGGCATGCACATCTTGAATGGCAATGGCCTCCTCAGTGAGCACAGCTCTGGGACCGCCAAGCTGCAGCAGATGGTGGAGAGCCTGGAGAAGAAAACCGGTGACCCAAACGAGTGTGTGATCTGCCACCGAGTGCTGAGCTGCCAGAGCTCCCTGAAAATGCATTACCGGACACACACTGGGGAGAGGCCTTACAAGTGTAAAATCTGTGGCCGGGCTTTCTCAACCAAGGGCAACCTGAAAGCTCATTACGGTGTCCACAGGGCTAGCACGCCACTGAAGATGCAACACTCCTGTCCCATCTGCCAGAAGAAGTTCACCAATGCAGTGGTCCTACAGCAGCACATTCGCATGCACATGGGAGGCCAGATACCCAACACCCTGCTGCCAGAGAACTCCTTCGAAGGGCCAGAGATGGAGTCTTCCTTGCCTGACGAGAGAGCCCCTGAGTTGAACAGCTACAATGACGAGAGCCTGGATGAGCCGGAGATGGAACGGGATTCCCAGGAAGCTCCCAGCGGCATCAACCCCAAGCCTTtgcctctgcctctccctcacTTTCCCCTTCCTCTGTCTGTGCCACCGCCCCCTCCTCCAGCTCAGGAAGATCAGAccacctctcctctccctcttttctCGGGCATAGCTGCCCTGGAGAATCACATGAAGAACGTCACCTCGGCCTTAAACCTGCAACGGCAGGCCAGCATGGTTTCAGAAAGTGATGGAGCAATGACTGAATTTCCTGCATTGCCTGGGGATCAGGAATACCAGAATGGCAGGAGCCCAGCAGTCTCGGACTCAAGCTCATTCCACTCGTCATCGCCCATTGACAGCCAGCTGGGAAGCAACGTGTCGAAGTCTCCAGGCACCGCCGCTGCCACCCCTGAAGATGGCAGCCGAGTGAACTCCAGACCGGAGTCTGATCACGGGCATCTGGACACTGAATCCAGTGGGGCTTTGGATCTCACGTCTGTCAACTTTCTCCCGAGGGCAATCAAAGAAGAACCTGGCCTTTCCATGTCAAATGGAGAGTATGgTGCTAGCCATATTCAGTTCATGCGAGTTCCACCCAGTCTCATTAAGCTGGAGATGCAGATCCCTCCTGAAAGGCCACTAGGCTCCCCGAACCAGTTTCTGGGCTCCCCGAACCAGTGCCTGCAGCAGCCCCCCAGTACTGCCGCCCCCCGCCGCTCTGCCAAGCAGCACCTGTGCAACACCTGTGGAAAGAACTTCTCTTCGGCCAGCGCCCTGCAGATCCATGAGCGTACTCACACTGGGGAGAAGCCCTTTGCCTGCACCATCTGTGGCCGTGCCTTCACCACCAAGGGCAACCTCAAGGTTCATGTGGGGACTCACATGTGGAATAACTCTGCGAGACGGGGTCGCCGCCTGTCCTTGGATAACCCCCTGGCGCTGATGGGAGCAGGAGCTGAGCCCAAGATGTCCGAGATGGGTACCCCACCCAAGGATCTGGCTCCTCCCCCAATGAACATCGATCCTTCTGTCTGGAACCAATATGCTGCCGTGTTTACAAACGGACTGGCTATGAAGACCAATGAGATTTCGGTCATCCAAAATGGGGGCATTCCAATGCCTGGCAGTTTTGCAGGGGGGCCTTTAGCAGGCTCCACCGGAGGCCTAGTGAAGATAGATGGGACTCACTCTGGCCTCCCAGTCTCCATGGCGGAAATCGAGAAGAACGGGTTGGAAAGCGTACCAAAACGCCAGTTTCCTCATTTTATGGAGGAGAGTAAAATTGCAGTGAATTAAATGGCAGCAGACCAGTTGGACAAGGCACAAATTCTTCACTTTTAGTCataggccttttttttttttttttttttggcaaatctGCCAACAACCTCATTTTCCTactgaaatgtataaacagGTTTTTATAATATCTATGTTTCTATTGAACACTTGCTCACAAATGAGTACAATCACTTTTTGTTTAATGTGCTTTGCAAAATCAAAAGTGGAGTTTTCTCTCACTGAACAAACATTGCGGGTATTGCAAAGTgaaatttactttttctttttcttacttGAAGTGTACAgcctttaatttttttatatatatatttttcactttctcATCCAAAGCTTTAAACTGTTTACCTCTGTTTAGTGCTAGTATTTCTTCGAGTAGAACTTGAAATAAACTACTGTAGAGATTTTGGATTGCTTGTATTTACTATTGTATGTTGAAATAAGATATGCGGGTAACTTTTTTTTACTGCCAAGACTGCCATCCTTTTAGTCTGTTTTCTCTGGATGTTGAATGTATTAGTCTTACTTGAAACGTCTTGGCCTATTAATGGGTCTCTTTTGGGGGGAAAACTCCTATGCCTTGGCAGTATGTTCTGCAAGATGTAGATTTCTTGGAGTATGTATCTTTTAGTCTTGGTTGggggaaacttttttttatttgaagtccTGTTATTTTGTCAACAAAGGATCTGAAAAGTTTTAAACCCACAAGATTGCCATCAGTTATATGTAGGATACTTTTGCAAATGTCTAGGAAATATTGAAATCTCCCTCTCGCATGGTGGAGAAGTGGAAAAAATGGTTTGGTTCCAAGTATTGGACAGCTTGACCCCTGTGGCTTGTGGATATGGAATTAAGCTCTCGGATATATTTGAAATTCCTTTTGATAATGGAGATTAGTTATACTTTGGTCTATAGTCCATTTATACCTGGTCAAATTTGTCCAGCACTTCTTTCAAGTGCCTAGCTTTAACTAACTCTGCTTGTACTGCACATAACTTTTACACTTGCATAttttgtggtggttgttgtggAGTTTGTCTCCTTTCCCCTCAGACTGTGATGTCCAAGATTTCTGGAAAGTCTTGGTGTGAAAATTTAAGCTTAACTCCTCCAGGAAAAACCTGGTCATTTGAAATGGTTTGAAGCCCTCCTGAATTTTCCTGAAATGGTTTCTGTCAAAGGGGGATGGGGGACAAATCTTCTAGAAGCAGGGTACTTTCTGGAACCAAAGTTTTAGTCCTAAAATCTGTTCTACTAATGACTGCCTTAACCCATGCCTGCACTTTAATATAAACTCATTTTCTCTCTGGGTTTTCAAATCATATCCAATTCTAATGACTCCTGTGTTTTGCAAAGCTGTTTTAATCGTATGGGATGGGTTTGAAtagtaaaatgcatttcaattggGGGGGCTTAATAGTTGTATGAATTTAGGGCATGGTTGCCTGCTGTATAAGGTTTTTTTGTGGTATATTTTATTACCCCAATACTCCTTCAtggtatatattttcaacatctTACTGATACCTGTTCACCCTTTCTGAAAACTGTTTGCTGTCAATGAACACTAACGATctcaaaatgtttgtattaagAGGCCTTTTCTTCCACTcaggattatttatttcatttagcaCATTGAGTAAACATTTAGGAAAATTTCAGGCAgctgctttcttctttttcttcctaaaaactgtttttccgtaaaatgaaacaaaatatacgaatagatttttgtaaaaaatataaataaagaccaATAGGATTTATGAAACTCTTCAAAAAGGGGAGGAAAgaactaaaaccaaaaacatgtgTGTTCCCTTAATCAAAGAAACTGAATATTCCTTAGGTTTCTGTACAAATACACCAGGTAGACTTATCACACTGGTCTGTACTACAGTAGGGCTTTTTTGGGGATCATACAGAATTTTTATTTCTACCtcattgctatatatatatatatatattttccttttattggaGTAGTGTTGTAATTGTTGTAAATTTGAGCTTTTAGAGTGGATGCTCCATGTTTTCTCTTAATGTAGGTAAGATGCATTTTTCCTTGAGCAAAACTGAATTTCTCCTTTTCAACACTTATTTTATCCATAACCTGCtgatattttgaattgaatgtatTGCCAGATACTTTGCACGTCTCTTGCTCTGAACAAATCctttatttgcattaattttctTACTGAGTTTTGTTATTGGCTTTTCTTTTAATCGTAAACAACTCCCCTCGCCCCCCCTGGAAAATAGTGTTACTGCATCTTGCctccaaatatatatagatatatattttgccaagttgtgcctttttaaaaactgcatcACATTTTCTGGACTGGAGGCATCattcttatatataaatataaaagtttgTGATCTAATTGTTTCTTCTGTTACTTTCTATGAAATTGGTCCTGTTTGGGCATGTTTACATTGCAGACTTCAGAAGTGTCACCTGcaaaatcatttgttttcttttgagcaTCTGCTTGTTACTtttctggtctttttttttttttaaataaaaa

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008301 True 5990 mRNA 0.45 4 50924052 50936800

Neighbor

gene id symbol gene type direction distance location
AMCG00008302 atp9a,LOC106567116 coding downstream 7672 50840260 ~ 50916380 (-)
AMCG00008299 NA coding downstream 110246 50810379 ~ 50813806 (-)
AMCG00008300 nfatc2 coding downstream 125733 50792076 ~ 50798319 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding downstream 364731 50550065 ~ 50559321 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding downstream 405513 50451087 ~ 50518539 (-)
AMCG00008303 zfp64,LOC106572631,LOC104953815 coding upstream 90468 51027268 ~ 51036822 (-)
AMCG00008305 NA coding upstream 484674 51421474 ~ 51441540 (-)
AMCG00008306 NA coding upstream 534419 51471219 ~ 51497212 (-)
AMCG00008307 NA coding upstream 573954 51510754 ~ 51515400 (-)
AMCG00008311 NA coding upstream 806609 51743409 ~ 51743798 (-)
G30108 NA non-coding downstream 170878 50750421 ~ 50753174 (-)
G30096 NA non-coding downstream 263876 50659944 ~ 50660176 (-)
G30094 NA non-coding downstream 269539 50654219 ~ 50654513 (-)
G30091 NA non-coding downstream 310149 50613588 ~ 50613903 (-)
G30086 NA non-coding downstream 322002 50601457 ~ 50602050 (-)
G30143 NA non-coding upstream 131340 51068140 ~ 51068561 (-)
G30149 NA non-coding upstream 245874 51182674 ~ 51182933 (-)
G30170 NA non-coding upstream 483847 51420647 ~ 51421417 (-)
G30172 NA non-coding upstream 488531 51425331 ~ 51425584 (-)
G30218 NA non-coding upstream 817283 51754083 ~ 51754304 (-)
AMCG00008298 NA other downstream 396016 50523987 ~ 50528036 (-)
G30054 NA other downstream 649869 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 869950 50053825 ~ 50054102 (-)
G29928 NA other downstream 1018963 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 1386771 49497400 ~ 49537281 (-)
AMCG00008318 NA other upstream 1392436 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 1444256 52381056 ~ 52384567 (-)

Expression


Co-expression Network