AMCG00008305


Basic Information

Item Value
gene id AMCG00008305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51421474 ~ 51441540 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008305
GAAGACACGGGCTGCATAACTACATTCACTTAacgtggagagaaaaaaatctctCATTCGGGGAAAATCTGTCGAGATTGTGCGAAATTCTGGATGCTGATTGGACCATAACTTGTCAAGACTGGTTACTGCTGAATGTGTTGGCACAAAGACACTGGATGCCATCGTGCTGATGTACCTTATTGACAAGCCCTTTGAGTACTATTATGACACACCACATCATCAGCACAAAGGATGGCACATTTTGGAGCAGCACTGCAGTTTTCcttattgaataaataaacattcactgcaggacaaatacatatttttgataGACACTTAACATGCAGAAGTGCAGAAGGAAGACCAAAGGAATCACGCAAAGTGCCTGTTAAACTCGAGCTGAAGTACACAAACTGAAAGCTGTGGAAGAAGCCAGATTGATAGGGTTAAATCCTTTTCTCTTAAACTTTTTATTAAGGTGTTTTTGTGACTGTGGGAGACATGCCTACTCATCCTTTAATATCCTACATGGAAAGTCCTGATGGACTAGGTCAAGACATAGTAAACATTGCCAACGCCAGTATGCCAGGCACGGGCTCCAGCATGACGCCACACTCCAGCATACCGGAGAAGGCTCTGTCCCAGGCAGAAGGGTGCATGCCTCTGGACTGTATGTTTTGTGAGAAGACCTTCAAGCACCAGGATGAGCTCAGCCCCCACGTCATGACCCAGCACCCCACCACACTGTTCGAGCCGGCCGTTCTTCGCGTGGAAGCCGAGTTCCTGAGTCCCAACGAGAGAGGCAGGGGGAAGGTCAGCCCTCCTGCTGACAAAGAGGAGGCGCTGGGTTGTGAGGTGTGCGGACAGGCCGTGGAGGACGCAGCGGAGCTGGAGAGCCAcatgaagaagcacaaagactCTTTCACCTACAGTTGCAACGTCTGCGGGAGGCGTTTCAAGGAGCCCTGGTTCCTGAAGAACCACATGAGGACCCACGGGAAACCGGGCTCCAAGAGCAAGGCACAGCAAGACCTGGAAACCCCTGTGACCATCAATGAAGTTGTCCAAGAACAAATGGCAATGACCATCAGCTCTCCCTACAGAATGTGCATGGTGTGCGGGTTCTTCTTCCCCAGCAAAGAGATCTTAATGGAGCACATCAAGATACACAACCGGGAGTCAGAGGTTGATGAAGGAGAAGGCCAGGCTACTGCCAACCCGCTTGCCAGCACGGCGCCTCGATGCCAGGAATCCTTCTTGGAGATTTTTGGCCTACAGTCTCGCTTgtcagaaaataacacaaagccAGAAAGGTCGGCAAAGTGGATACCCCAGTTAGACCCCTTTAACACCTACCAGGCCTGGCAACTTGCCACCAAGGGTAAAATAGCTGTGGGTCCGAGCCAGACCAAAGACCTTGGCCCAGACGTCAGCACAGACAATGAGGACTCCTGTTCTGATAAAGAGGAACTGACTGAAATATGGGCCACAGGCAGAAGCGACAAGTCCATTAAAGAGGGCTATGGCAGTGAGCAGAGGTCCAAGCATGCTGGTGGCACGACCCCTTCCCCCGAGCTGGATCCGAAGTCCGGGAGCAGCAAGGACAAGCCCACTCAGTGTGGGGACTGTGGGAAGACATTCAGGACCTACCACCAGCTGGTGCTGCATTCCAGGATTCACAAGAAGGAGAGGGGTGGTGCGGATAGTCCTACAACCTCTATAGATGGAAAGCCATTAAGCGCAGTGGACAGTGCGATGTTAGACCGAACAGAAGAGTGCTCTGAGGATGGCTCTGAAGAGGGACTGCATGGTGATGCCTTTCAGTCAGATAAAAGTGAAGATGGCTCTGAAAAAGGAAAGATTAAAATTCTTGCATCCTCCAAAGAATGCAGTTACTGTGGAAAGAGTTTCCGTTCCAACTATTACCTCAATATTCATCTCAGGACACACACAGGTGAAAAACCATATAAATGTGAATTCTGTGATTATGCTGCAGCTCAGAAGACCTCACTAAGATATCACTTGGAGAGACGTCATAAAGACAAGCACCCTGATGCTGAGACTTCTGCTAAAATTGTGTCGGCGTCACCAACTCCAGACTATGTTTTGCCTGCCAAGGATAAATCTTCTCAGGAATTAGCCAAAAATGCCGACGGCAACCAAGATGAAAAGCAATCCAAACCATGGCCTGTGTCCAGCATGGGGCCCGAACATGCGTCTCCTGTCACCGCTCAAAATAATCTGATCTCCGGCAAGACCGTTATCAAGAACCCCTGCCAACGTACCCAGGGCAGTACCGTCAAAACAGAATGTGAGAGCTTGTCCGGTGCGGCTGAGCATCCTTCAGGCTCGGGTGATGAAGCACTTAAAAAGTACGCCTTATCACTCAATCTGAAGATGGAAGGAAAAGAGATGAAAGAAGAGTCATTTGAGATGCCATTAAATTTGTCCTTTAAGATGTCCCTTTCGGTTTCTGCTACCTCAGTTCCCAAGAGCGCATTAATCACCAGTACCTGCCCTTTATGCGTCTTTAAAACTCTATACCCAGAGGTCCTTCTAATGCACAAGAAACTGGTACATAAAGAAAAACCTGATGCTACAAAGAAAAATGGCTTAAGAAGCACACTGGCTGGACGCAAACTGAAGCGGTACACCGGCTGCCCACCGGCGCTCGAGGGTAACGATGTTGCTCCCTTGCCTCCTTTTTATAGGAGACATGCTCGCCGGACCAAATCTCCAACTCACCAGGCAGCCAAAGCAGCTGAGAGAGCTCCTCCTGCACGGCCTTCTCAAGCAGTGGTGCACTCCCCTGAAGCCCATGGCAGGAAAGGAGCCCCTCAGGACACACAGCAACGCTACAGGGTGGGGGACGTCCCAGGCAGCAGTCGACGGATGTCCATGACTGAGGGCAGGCCAGGCACCGCTAAATACACGGAGAAGTCCAGGGATTCGGACTTACACAACAAAAGGGACAATTTTGTGGTGTCCGTACAGCAGAACTATGTGGACAGAGAAGGACCAGTATCCAGGGTTCAACAGACCAGGAATGGGGCCGTGTGGCCCAGTGACACGGCGAGGACGTGTCTGTCAAGTCGGTTCCGACACTCTCCCCACGCGGACTACGGGGAGCCCTCCAGCAAGAGACACAAGCTCTCCGGCCCAATGAGCCGTGAGCAGGACCCTCCAGAGGGCACCGCTGTGCGGAGAGGGGACAGCTACGGCAAGCTGGTGTCTGCTGGGAGAGCCACGATGACCTCATCGCAGGGAAACTCGCCTTCCAAGATGACTTCGGTCAAATCCATCTCCTCCACATCCGCCAACGGAATGGAACCAGACTGGAAAGTCATCAATATCCTCCGATCCTACAGCCCTAGTGACCTGGCCTCACTGTATAACCCCAGTGGGGCCAGTGGTGGGCAAGGTGCCCCTTCTGCTGCATCGGAAGgGAAAAGGCAGTTGCTCTACCCACATTACCCAAGTAGCATGCTACAAAGGAGAAACAATCCAAGCTCCATCAGTAATGCACGCTGTGGCCCTACTGATAAGAATGCGTAAAATGATTTGACAGATGATGGTAAATGTCTCGATTAACCTGTCTAAACTTGCTGCAAATTGCTTAGACTTAGGGGGCAGACaattgcatatatacacacaatatattttttaaggtttGAATACTGAAGACTTCCAACAACCCCTTGTCAGACATTGAAGgttaaatgaaaggaaagctTCGACCCACTGATATAAGCTGTGATCTGTACATATCTCAAACACTACTGATATAGTGTTGGCAGTGccattgaaacaaaatatatgtaaaaatgtatagatttgcATATGCCAGTTAACCTACACATAGGCTAATGCTTGACTGTAATTAGATGTCAGGTTAAAAGTATGTGCCTAGATggttttggatttattttttttgttggtagGGGGACTGGagaataaaaatcaaatcaaaaagaGGGGGTAGCTTTCTTCTAGTTAAATGAAATGACCTGCATCTCAGTCTAAACTGTAAACCACCACCAGGAGGTCCACGGAGACCTTATCAACCTTTAAGTTGTAAAGGGTAAAGTTTAATCAATTTATGATTTTTCACTGTTTAAGTGCTTTTCAATGGCTGGACATTGGCCTGTCCTGGTGCCGGAGGCGACAAGGGGAAAGTAAAGTACAATAATTCACAGAAACATCTCCTTCATTAGCATGCGACCGAAAATGTAGGATTAGTGTTCACCACCTGAGAGGGAGGGCTTGGTCGTTCTATATTCTGGTGTCCCTTGCATCCCTACGTGGCGGCTTCTGCTCAAAAGTCATCCTAAGCCGTAGTTAGCCCTCACTGCCGGTGCCCACTGGACCCCCCCTTGTTTTAACACCAGGGACCTGCTTCCCAGAGTTGCTTTCTGAGGCCCTGctgggtttttgttttccaggctTTTGGGGAGGCTCACTTCAGTGCTAATGGAGCCTTCTGCATCTCTTTGAGCCCTGGAACAAACAGAGGTACATGCCAGACACGGGCAGGATTACTGTTGCACAAAACCCCCTTCTGCTCCAGTAAAGCAAAGGACAGTACTTGAAAGCAGGGGAAAATACAGCTACTGAATATACATCATCCCAGCCTTGGCCGTGTTACAACTAGACCTGCCCCCACAGACGTTCCTGTGGGTAAAACACTACTCTGTTGCTCTTTTGTAAGGCATTACAGTGCAATAGTGAAGAAATGGACCAAAAATGGAATCAATCAAATGCACCACTCAGTTGATacaggatttaaaaatactaaatgttGTGACAAAGCTTTTTGGGATCAAATATTTGCATATGTAATGTACGCCACATTAAATGCAGCAACACAATGGATTTTCCAGCTCTATATTTTGAGTACAGAGCAAGAGGCACCTTTTTTACACTCTTCGTGATGTGCTGTTTCCATACATTGCcccaaaatatttatttggttatttgtaCTGGTGACCCGTTTCTCCTTGAAGTGAGATTTAATTAGCCTTGCTATCTGCAGTGGTAATGAGATCTTCAGTGAATGGATGGTTGACTAAAAATATAGTAATCTAAACAGCCCAGGCTGAGAAACCGAGGTTTCATCAAAGAAGAAAACCTGCGGTGCATCACTCTTCCTGAAGAATGACTTTTCAAACCAGACCTGGGACTGGACTCGGTTTACATTGTGACCGATGAGTTGTCCAGCAACCGTAACAAAGTAGGGATGCTTCCAAGATTTTgaagaatgcttttttttttttttccctggtgTTTTTAAGACCAGACCCTTGTCAAGACCCTTGCCTTTGACTTGAGACATTGGTTACCTCCttcaaaatgtttcctttaGCAAGACTACATTGTTATGGCTTTCTCTCTTACAAGTTGCTTTTTCTAAGCGTACTTGGGAAGACTGGAGTATGAAAGTGTAAGAAATCTATATTAGTCTGCAGGTACAGTTcggcaaaacttttttttttttatttttgtgtgtgtatgatttaATATAAAGCACCATCTTATCCTTTCCCTATGACTTTGTAGATTAGCAGCTTTaggaaaagtaaattaaattctattttgttctcaaagtgaaaaaatacaatgtgtggGGGTGTTCACAGAAAATATGATCTGTCAtcttgttggttgtttttttttttttcctcctccggTTTTACCTGGTCTAAACTTGAAACCAGTTATTGTCAATAGATGCTCAGCatgcagtttaattttgttgtattgATTTCTGTCAGTTTCTGATAATAGGACAGGGATTTGAAATGTGATTTCTTCTGaatgcttttaaagaaaatcattATTGCATTAAGTTGTCTTGTGATTTTACTGGTTAAATGAgtgcactgtacacacacacacacacaacacccaaacataagtgtataatatttcataatttaagGCTCTGCTATGTCATTTAAATCCAAAGATCACATCGGTTTATACGTGTCACTCTAGCTAAATATTATATAGTTTCATACAAAACAGAATCTGAATGTTAAATTGTCTCCGCAACGTTATTAAAAATGGGTCTTTTCATAATGGAATCTCTTAATACACAATTGTATTACTGGATGTTTTagttgccttttattttattattatacagttagGTTTTGTTCCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008305 True 6148 mRNA 0.46 5 51421474 51441540

Neighbor

gene id symbol gene type direction distance location
AMCG00008303 zfp64,LOC106572631,LOC104953815 coding downstream 384652 51027268 ~ 51036822 (-)
AMCG00008301 NA coding downstream 484674 50924052 ~ 50936800 (-)
AMCG00008302 atp9a,LOC106567116 coding downstream 505094 50840260 ~ 50916380 (-)
AMCG00008299 NA coding downstream 607668 50810379 ~ 50813806 (-)
AMCG00008300 nfatc2 coding downstream 623155 50792076 ~ 50798319 (-)
AMCG00008306 NA coding upstream 29679 51471219 ~ 51497212 (-)
AMCG00008307 NA coding upstream 69214 51510754 ~ 51515400 (-)
AMCG00008311 NA coding upstream 301869 51743409 ~ 51743798 (-)
AMCG00008312 NA coding upstream 626942 52068482 ~ 52069809 (-)
AMCG00008313 cbln4,LOC106567122 coding upstream 695629 52137169 ~ 52144727 (-)
G30170 NA non-coding downstream 57 51420647 ~ 51421417 (-)
G30149 NA non-coding downstream 238541 51182674 ~ 51182933 (-)
G30143 NA non-coding downstream 352913 51068140 ~ 51068561 (-)
G30108 NA non-coding downstream 668300 50750421 ~ 50753174 (-)
G30096 NA non-coding downstream 761298 50659944 ~ 50660176 (-)
G30218 NA non-coding upstream 312543 51754083 ~ 51754304 (-)
G30220 NA non-coding upstream 403955 51845495 ~ 51845770 (-)
G30225 NA non-coding upstream 487566 51929106 ~ 51929379 (-)
G30228 NA non-coding upstream 625668 52067208 ~ 52067456 (-)
G30231 NA non-coding upstream 650092 52091632 ~ 52093655 (-)
AMCG00008298 NA other downstream 893438 50523987 ~ 50528036 (-)
G30054 NA other downstream 1147291 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 1367372 50053825 ~ 50054102 (-)
G29928 NA other downstream 1516385 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 1884193 49497400 ~ 49537281 (-)
AMCG00008318 NA other upstream 887696 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 939516 52381056 ~ 52384567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01158947_01164142 ZNF217 coding CI01000001 null 1158398 ~ 1165151 (-)