AMCG00008318


Basic Information

Item Value
gene id AMCG00008318
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52329236 ~ 52339097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008318
ATGGAAGGTCTAAACCTGAAATATACCAACTTGGAACAGAGGACTAACCACAGGAAACATGACACGGAGCGCCTCGGCTCAAAGTTCTTGGTGGTGCGGAGAGGACTACCCTTCAAGGTCACGTTGCTTTTTGAAGACCGGGGCTACAATCCAAACAAGGAAAAGCTAATTTTCACAGTCTTCCTAGgcaagtcaagtgtttCCTTTCCAGCCACCTTCTCGATGCACCAGTCCCAATCCCAGTGGAGTGCTCTGATTCAGCCCGGAGATATCCAATCCAGGTCTCTAAGCGTGCACATTGTCACACCCCCTGATGCTTGCATAGGCCTCCATACGCTTCACGTTCAGATTCTGTCTCCATACCAGTCGCACACCTATAACATTGCAGAGTTCATCTTGCTCTTCAACCCCTGGAGCCGTGTGTACATGGGCACGCCCCAGAACATGGTGTCTCGGTCGTGGGTTTTTGGTCAGTTTGAAGAAGGGATACTGGAGATTTGTTTGAATTTGCTGCAGCTCAGCCCTCAACACATGAGAAACCAACAAAAAGACTATCTGAACCGTTGGGACCCAGTGTATGTCAGCAGAGTGGTGTGTGCCATGATAAACTGTAAAGATGACAGGGGTGTCCTCAAGGGGAACTGGTCAGGAGACTACAGCACTGGAATGAACCCTTCTCAATGGACTGGGAGTGCTGATATTTTAAGACGGTGGGCGAGATCCCAGTTTAAGCCAGTGTGCCATGGACAGTGCTGGGTATATGCTGCTGTCATGTGTACAGtCATGAGGGTGCTGGGAATTCCAACGCGCGTCGTCACCAACTTCAATTCTGCTCATGACACCAACGCCAACTTGATCATTGAAGAGTTCTACAGTGAGAAGGGAGAAAAACTGCAGCTAACTCAAGATAGCATATGgaatTTCCATGTGTGGGTGGAGTGCTGGATGGCTCGTCCTGACCTGGGATATGGATTTGATGGGTGGCAAGTTTTGGACCCAACACCACAGGAAAGAAGCGAAGGTGTTTTTTGCTGCGGGCCGTGTCCAGTCAAAGCCATCAAAAAGAAACGTCTAGACATGATGTATGACACTCCTTTTGTGTTTGCCGAGGTCAATGCAGACATCCACACCATCATACTGAATAACAACTGCGAGGTAAACCGTGCCGTGGATGCCAGCCGGATCGGCTCTTTGATCTGCACGAAGGGCGTCGGCGTGGAATTACCGGAGAATATCACCAGTACTTACAAGGTTCCAAAAgATCCCATGACACGATATTCAGCACTCAACCGAAgaGGGATGAAGAGTGTAGAAATTACTATGATGATCCCCAAACTGCCAACAATCGGGGAAAGCATTTCCATCACTGTGACCATTGTCAACAAGGAGAAGACTGTCAAAACTGTTAAAGAAAACATCAATGCCCAGGCCAAAGAGTATAACCTCAGTCCAATGGCAACCTTCTGGGAAGAACACAGACGTATTCAAATGGGACCCTATGAAGTTAAGGACATACAACACCAGATTCTCTACTCACAGTATGCTAAGGCCTTGGTTGGAGACAATCTGGTGAATCTGGCAGTGGTGGTGGAAGATGAAGCTACACAAGACCGAGGGCTGGCCACAGAGGAGTTCAATATTGTCAGTCCTCGCATTACAATCCAGGTTGCCAACGAATATAacattgtgaaaaatgtggAGCAGAGTGGCCTTATTATTTTTACCAACCCTTTACCTGTGCCAATGAGTGGCTATATGATGACAATTGAAGGGATTGGACTGATCGAGGGGGAAATACAATCAGAACTCCCCATCCTGCAGCCTGCGAAGACAATTGAGAAAGTCTTCACTTTCACTCCCAAGGCGAGTGGTTTGAAAATGCTGCAGGCCAGCTTGGTATCCAGGGACCACACAAACATCAGAGGATTCAAGACTATCCAG
>TU37855
CCCCACTAGGCTCCACTCCCATGTGACTATACCTCCCTTCCAACCACGCCACCCCATTTTTATTGATGTGAGAGCAGGGGCCTCACTAACAACTACTACCCCCCTACAGGTCTAAACCTGAAATATACCAACTTGGAACAGAGGACTAACCACAGGAAACATGACACGGAGCGCCTCGGCTCAAAGTTCTTGGTGGTGCGGAGAGGACTACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008318 True 1941 mRNA 0.48 14 52329236 52339097
TU37855 False 213 lncRNA 0.53 2 52337483 52338366

Neighbor

gene id symbol gene type direction distance location
AMCG00008322 NA coding downstream 35822 52252677 ~ 52293414 (-)
AMCG00008314 NA coding downstream 79140 52189182 ~ 52250096 (-)
AMCG00008313 cbln4,LOC106567122 coding downstream 184509 52137169 ~ 52144727 (-)
AMCG00008312 NA coding downstream 259427 52068482 ~ 52069809 (-)
AMCG00008311 NA coding downstream 585438 51743409 ~ 51743798 (-)
AMCG00008321 NA coding upstream 5932 52345029 ~ 52345527 (-)
AMCG00008319 NA coding upstream 17404 52356501 ~ 52362043 (-)
AMCG00008317 pxmp4,LOC103464829 coding upstream 27056 52366153 ~ 52370382 (-)
AMCG00008323 NA coding upstream 47263 52386360 ~ 52388370 (-)
AMCG00008324 LOC106566898 coding upstream 49698 52388795 ~ 52425671 (-)
G30276 NA non-coding downstream 2845 52326161 ~ 52326391 (-)
G30275 NA non-coding downstream 3199 52325705 ~ 52326037 (-)
G30270 NA non-coding downstream 40113 52288890 ~ 52289123 (-)
G30266 NA non-coding downstream 50117 52278857 ~ 52279119 (-)
G30237 NA non-coding downstream 172157 52156790 ~ 52157079 (-)
G30409 NA non-coding upstream 740487 53079584 ~ 53082902 (-)
G30417 NA non-coding upstream 806088 53145185 ~ 53148173 (-)
G30479 NA non-coding upstream 1072897 53411994 ~ 53416431 (-)
G30486 NA non-coding upstream 1091855 53430952 ~ 53434101 (-)
G30505 NA non-coding upstream 1147744 53486841 ~ 53491107 (-)
AMCG00008298 NA other downstream 1801200 50523987 ~ 50528036 (-)
G30054 NA other downstream 2055053 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 2275134 50053825 ~ 50054102 (-)
G29928 NA other downstream 2424147 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 2791955 49497400 ~ 49537281 (-)
AMCG00008325 znf341,LOC106566899 other upstream 41959 52381056 ~ 52384567 (-)

Expression


Co-expression Network