AMCG00008329 (cbfa2t2)


Basic Information

Item Value
gene id AMCG00008329
gene name cbfa2t2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52493341 ~ 52505322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008329
ATGGAGGAGCCGGAAAGCTGTCAGAATTCTCCTCATGTGACGGCGGAGCGCAGCAGTGCGAGCCATCTGGTGAACCCTTCTGAGAGGCAGTATGATGAAAACAGTGGAGAGAAGAAGACCCCTGCCATGCCCGGCTCCCCTGTGGAAGTCAAAGTTCACTCCAGATCGACACCCTCCGCCATGCCACCACTGCCACCCGTCAACCCCAGTGGGCCCCGGCCCGCCTCCTTCTCTTCGACCACAAtgacCAACGGGATCAACCACTCGCCGCCAACGCTCAATGGAGTGCCCTCGCCACCACAGCGCTTCAGCAACggaccctcctcctcctcttcctcctcattgGCCAATCAGCAGCTGCCGGCGACCTGTGGTGCCCGGCAGCTCAGCAAGCTGAAGCGTTTCCTGACCACGCTGCAGCAGTTCGGCAACGACATCTCCCCCGAGATCGGAGAGAGCGTGCGCAGCCTGGTGCTGGCTCTGGTGAACTCCACGGTCACAATAGAAGAATTCCATTCCCGGCTTCAGGAGGCCACCAACTTCCCTCTTCGTCCGTTTGTGATTCCCTTTTTAAAGACGCCGGCCCAGTACCTCTCCCAGCACGAGCACCTGCTGCTCAGCACCACGCTGGCCTCGCCGCCCGACTCCTCcgagctgctgctggagcccGGCGACAGCGCCAAGAGACACAGCCCCGACCGGGGCAAGGAGAACGGTTTTCACGAGCGAGGCCCCGCCCCCCTGGAGCCGCCAGCCAAACGGATCTGCACCATCAGCCCCGCCCCCCGCCACAGCCCCGCCCTGCCGCTGCCCCTGCCCCTGAGTGGCCAGCTGCACCCCACTCCCCCGCCCCTGCAGCACTACGCCCTGGAGGACATCGCTGTCCCTCACCTCTACCGCGAGCCACAGCGCCTCCTCGAGCTCAGGGACCTCAAGGAGCGGCCCCGCCATCCAGGCACTAATGGGGGCTACCGCGAGGAGCCAGTGGACCACAGACTGACAGACCGAGAGTGGGCGGATGAGTGGCGGCACCTCGATCATGTGCTCAACTGTATCGTGGACATGGTGGAGAAGACACGGCGCTCCATCTCGGTCCTGCGCCGGTGCCAGGAGTCCGACCGCGAGGAACTCAACTACTGGAGGAGGCGCTCCAGCGAGCATGAGGAGGCCAGGAAGAGCGGGCCGCCCTTCTCCAAACCCCACAGCCCCCGCTCAGGAGAGGGTCTGACCAGCGaatcccagcgcGACTTCACGCCCCGGCCGGGTTCGGGTTATGTGCCAGACGAGATCTGGAGAAAAGCTGAGGAGGCCGTGAACGAGGTGAAACGCCAGGCAATGGACGAGGTGCAGAAGGCCGTGGCCGAGGCCGAGCAGAAGGCTTTCGAGATGATCACGGCCGAGCGCGCCAAGATGGAGAAGACCCTCGCTGACGCCAAGCGGAAGGCCACAGAAGACGCGATCCAGGTCATCAACGAGCAGGAGGACTCCAGCGAGAGCTGCTGGAATTGTGGACGCAAGGCCAGCGAGACCTGCAGCGGGTGCAACGCCGCCCGCTACTGCGGCTCCTTCTGCCAACACAAAGACTGGGAGAGGCACCACCTGATCTGTAGCCCTGGACTTCAGGCACAGCCCAAGCCTCTCTCAGCTGTAACCACCAGGGATACCGGCAAAGCCCCGGACAGTGCCGCTGCTGCCAGCCCTGCCCTGGAGAAGGTGACTGCGATCACTTCCAGGTCATCGACACCAGCCTCGGTCTCTGGAACAGAAACGAATGGTCACTAAAGGTCCCTTCTAGGATGGAGGCCTGCTCAGCCATCAGAGTTGTACTGTATGtcggggtggggtgggggtgggaggttataaaaagaaaatcttttcAGCTTCAGAGCTGCCAACTTTTCTGGCAAGAAGACTCTTCTCTGGATTTGCTCAGCTGTGATTCGAAACACATCTCAGTTTGAGAAATGAGAAGTTCTGaggtatcttttttttttttttaaagcgtTCCAGGAAACTGAGGGAGAAGGAAGAGAGGCATATTCCTGTACTTGCCCATGTTGGCTCACTAGCCTCTGTAGGACAAATGGACAATCTTCTGGAAGGACGGATATGTGGCGTTTCTTTTCCCCCTAGTGTCCGGAAAATTCTGAACAGACTTCACCAAGGCACGAGAGGTGCTATTGCAggatttgttatttaattagggtttccacatttttatgtttgtgtgtgcgtgtgtgtttgtacaattaaaaaaagaaaagcgaaaaaaaactaaacaaaaaaatacaaaaaagtttcccaatatttatttctgatagATTTGTAATGTAAGTCGGTTCAGTGTGCATTCACTGGTAtccatttaacattttttttatctttataacACCCAGACTTGGGGTTGGCCTCTTTGTTTATCATTCAAAAATTAACTCAAACCACGAGATCATAAAATCATGTAATCCTGTCcctcaataacattttttttcttccctgtcTGTTATGTGTGGATGCTGGTGAAATTGTCTTTTGTATTCGTTcggtttctttcattttctgtgtggaTTTTGCATTCAGGGACTTGCCATCTTTTAACAGAGATTCGAATGCTTCGGTGTCCAGAGCAATATGAACTCCGTATCCGGGTGCATCAGGCAATTGTTAAAAGCCAAAGTTTTGTGTAGATGAAACTTTCATGTTGTGTGTAACTCTCCATGACTGTAAATATGTACTTTGCTGAAATAACAGAATTCTGAGATTTTCAAAGCAACCTCGACAGACAGCGACGCACAAATAAAACTGCTTTACGATGTAGTTGCACCCATAACACAGTTTGATAGTTGACTGTTGCACCTGCACCATTTAGATTGTCTGGAATGATGTTGTCATCCAGGGTGTtataataaacactttttaaacaaagagTTACTATCGTTTGGGGTTGGggggattaaaaataaactcaatgGAAACcctaattataaaatgtaaacttttacAGAACAGTTTCTTTGTAAAGCTTAAAGCCACAAACTAGTTCCATTTTCATTGACCCTGTTTTCTGTGTCTCACAGTTCTATTGAAATCTCAGGAGTATATTgtacattgttattaatatgtttatgtcaccattaaataaaatgagaaaagacAAAGA

Function

symbol description
cbfa2t2 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2).

NR:

description
PREDICTED: protein CBFA2T2 isoform X2

GO: NA

KEGG:

id description
K22751 CBFA2T2; CBFA2/RUNX1 translocation partner 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008329 True 3160 mRNA 0.52 12 52493341 52505322

Neighbor

gene id symbol gene type direction distance location
AMCG00008324 LOC106566898 coding downstream 67670 52388795 ~ 52425671 (-)
AMCG00008323 NA coding downstream 104971 52386360 ~ 52388370 (-)
AMCG00008317 pxmp4,LOC103464829 coding downstream 122959 52366153 ~ 52370382 (-)
AMCG00008319 NA coding downstream 131298 52356501 ~ 52362043 (-)
AMCG00008321 NA coding downstream 147814 52345029 ~ 52345527 (-)
AMCG00008331 NA coding upstream 66798 52572120 ~ 52584025 (-)
AMCG00008332 NA coding upstream 121193 52626515 ~ 52649562 (-)
AMCG00008340 NA coding upstream 771057 53276379 ~ 53281571 (-)
AMCG00008339 NA coding upstream 795154 53300476 ~ 53303340 (-)
AMCG00008341 NA coding upstream 800476 53305798 ~ 53357218 (-)
G30276 NA non-coding downstream 166950 52326161 ~ 52326391 (-)
G30275 NA non-coding downstream 167304 52325705 ~ 52326037 (-)
G30270 NA non-coding downstream 204218 52288890 ~ 52289123 (-)
G30266 NA non-coding downstream 214222 52278857 ~ 52279119 (-)
G30237 NA non-coding downstream 336262 52156790 ~ 52157079 (-)
G30409 NA non-coding upstream 574262 53079584 ~ 53082902 (-)
G30417 NA non-coding upstream 639863 53145185 ~ 53148173 (-)
G30479 NA non-coding upstream 906672 53411994 ~ 53416431 (-)
G30486 NA non-coding upstream 925630 53430952 ~ 53434101 (-)
G30505 NA non-coding upstream 981519 53486841 ~ 53491107 (-)
AMCG00008325 znf341,LOC106566899 other downstream 108774 52381056 ~ 52384567 (-)
AMCG00008318 NA other downstream 154244 52329236 ~ 52339097 (-)
AMCG00008298 NA other downstream 1965305 50523987 ~ 50528036 (-)
G30054 NA other downstream 2219158 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 2439239 50053825 ~ 50054102 (-)

Expression


Co-expression Network