AMCG00008332


Basic Information

Item Value
gene id AMCG00008332
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52626515 ~ 52649562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008332
ATGAACAATTGTTACAGTTCCTCTTCTTTTCTCACCCAGATCCAGGAGATGACACACCCAGACGGCTCACATTATGACGCCACCCATCAGGGCCCTCTGATAAACAGATCACCTAGGATACTGTCACATCACATGAGCACTCTGTCCCAGCTGAACTCTCAGGTTGGCCTGCGAAGTGCCGTTACCCATGGTTCCCCCTCACCTCCAGGAAGTAAATCGGCCACACCCTCCCCCTCCAGCTCTGCCCAGGAAGAGGAAACTGATTCCCATTCCAAGATTACTGGGGAGAAAAGGCCCTCTTCAGAAATGATCAAGAAACCCAAGccacagaaaaagaagaagaagaaggaccCCAACGAGCCGCAGAAACCCGTCTCAGCCTATGCGCTCTTCTTCAGGGACACTCAGGCCGCCATTAAAGGACAGAACCCCAATGCTACCTTTGGAGATGTCTCCAAAATCGTGGCCTCAATGTGGGACAGCCTGGGAGAGGAGCAAAAGCAGGCATACAAGAGGAAAACAGAGGCGGCCAAGAAGGAGTACCTGAAGGCTCTCGCCGCGTACAGAGCCAGCCTGGTTTCCAAGAGCTACAGCGATCAGGTGGAGACGAAAAGTGCCCAAACAAGCCAGCCTTCGCACATgatgccaccaaaacagcccttgTACAGCGTGCCACCCCAGCCCTCCTCCACGTACCTGGGCCCGGGATCCTTCCCCCTGTCTGACCTGCAGAGCTACGGGGCCCCCCAGCGCCACAGCCTCTCCAGGACCCTGAGCCAGTCGCAGATGTTGCCCAGCATGAGTgcctctcccccctcctctttTCAGATCAGCCCTCCTCTGCACCAACAGCTCTCCCTGCACCAGAGCTCCCTCCTCAACCAGCCAATCCGCATGCAGCAAGTCCAGTCGCAGCCAATCATCTCCCATCAGATGGGGCTCCAGGCTTCtctccactcacctcctccaggCCAGCAGGGTTTCTCTCACATTCAGTCAGAGTATCAGAACAATGTTGGCTCCCAGTCTCCAGGATCTTCTAACCCGGTGGGGGGACAGAATCCAGAATGGGACAGCGAGTACTGCAATCGGGAGTGCGGCGTCAACCACTGCAGaaggaTTTCAAGCAAGTCCTAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008332 True 1137 mRNA 0.56 6 52626515 52649562

Neighbor

gene id symbol gene type direction distance location
AMCG00008331 NA coding downstream 42490 52572120 ~ 52584025 (-)
AMCG00008329 cbfa2t2 coding downstream 121193 52493341 ~ 52505322 (-)
AMCG00008324 LOC106566898 coding downstream 200844 52388795 ~ 52425671 (-)
AMCG00008323 NA coding downstream 238145 52386360 ~ 52388370 (-)
AMCG00008317 pxmp4,LOC103464829 coding downstream 256133 52366153 ~ 52370382 (-)
AMCG00008340 NA coding upstream 626817 53276379 ~ 53281571 (-)
AMCG00008339 NA coding upstream 650914 53300476 ~ 53303340 (-)
AMCG00008341 NA coding upstream 656236 53305798 ~ 53357218 (-)
G30276 NA non-coding downstream 300124 52326161 ~ 52326391 (-)
G30275 NA non-coding downstream 300478 52325705 ~ 52326037 (-)
G30270 NA non-coding downstream 337392 52288890 ~ 52289123 (-)
G30266 NA non-coding downstream 347396 52278857 ~ 52279119 (-)
G30237 NA non-coding downstream 469436 52156790 ~ 52157079 (-)
G30409 NA non-coding upstream 430022 53079584 ~ 53082902 (-)
G30417 NA non-coding upstream 495623 53145185 ~ 53148173 (-)
G30479 NA non-coding upstream 762432 53411994 ~ 53416431 (-)
G30486 NA non-coding upstream 781390 53430952 ~ 53434101 (-)
G30505 NA non-coding upstream 837279 53486841 ~ 53491107 (-)
AMCG00008325 znf341,LOC106566899 other downstream 241948 52381056 ~ 52384567 (-)
AMCG00008318 NA other downstream 287418 52329236 ~ 52339097 (-)
AMCG00008298 NA other downstream 2098479 50523987 ~ 50528036 (-)
G30054 NA other downstream 2352332 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 2572413 50053825 ~ 50054102 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016675 tox4a coding NC_007113.7 CM002886.2 38068069 ~ 38080075 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_18185156_18206837 NA coding CI01000340 null 18184910 ~ 18206837 (-)