AMCG00008334 (prex1)


Basic Information

Item Value
gene id AMCG00008334
gene name prex1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52991285 ~ 53087480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008334
attttgttttccaacattGAGAATATTCTTGAAGTTCACAAGGAGGTCTTGGCAGCCCTGGAGCATAATTTACAGCCAGAGCCCCAGGCACATCATGCACTCGGACAAGTATTCCTTCAGTTTAAAGACCGGTTCTGTGTATATGAAGAGTACTGTAGCAACCACGAAAAAGCTCTCCGACTTCTCATGGAGCTCAACAAAATTCCCAACATAAGGACTTTCTTACTGCACTGCATGCTGTTGGGAGGCAAGAAGACAACAGATATCCCCCTTGAGGGTTACCTTCTGACACCCATCCAGAGAATCTGTAAATACCCCCTGCTGCTAAAGGAGCTACTGAAAAGGACCCCGAAGAAGCACAAGGATTACCCCGCAGTGGAGGAGGCGCTGAAGGCCATGAAGACTGTCTGCTCCAATATCAACGAGACCAAGAGGCAGATGGAAAAGCTGGAAGCCTTAGAACAACTGCAGTCGCACATCGAGGGGTGGGAGGGTACCAATCTGACTGACATCTGCACTGAGCTGCTTCTGCATGGCAATTTACTGAAGATATCTGCAGGAAACATTCAAGAGAGGGTCTTCTTCCTGTTTGATAACCTGCTGGTCTACTGTAAACGGAAATCAAGAGTGGCAGGGAAGAAATCAACTAAAAGGACCAAGTCAATCAATGGACCACTGTACGTTTTCAGGGGCAGGATCAACACAGAGGTGATGGAAGTGGAGAACGTGGAAGATGGAACAGCGGATTACCACAGCAATAACTACACAGTGACAAATGGCTGGAAAATCCACAACACGGCGAAAAACAAGTGGTTTGTGTGCATGGCCAAGAATGCtgaagaaaagcagaaatgGCTGGATGCGATTCTcaaggagagagagcagagagagaGTCTGAAGCTGGGAATGGAGCGAGACGCGTACGTGATGATTTCAGAAAAAGGAGAGAAACTGTATCACATGATGATGAGCAAGAGCCGACATCTGATCAAAGACCGGCGGAGGAAGCTCAGCATCGTCCCCAAGTGCTTCCTCGGAAATGAGTTTGTGTCCTGGCTGATGGAGAGTGGTGAGATCAGTAAACCAGATGAGGGAGTCAACCTGGGCCAAGCCTTGCTGGAGAACGGCATTATCCATCACGTGTCCGATAAGCACCAGTTCAAGAACGAGCAGGTGCTCTATCGATTCCGCTATGACGACGGGACATACAAAGCCAGGAGTGAGATGGAGGATATCGTTTCAAAGgGTGTAAGACTGTACTGTCGACTTCACAGCTTATTCACTCCTGTAGTGAAAGATCGAGATTACcatttgaaaacattcaagTCTGTTATTCCTGCAAGTAAGTTGGTGGACTGGCTACTAGCTCAGGGAGTTCTTCTGCTGAGGTGTGTTTTCTCTCCACAGGGGGACTGCTCTTCCAGGGAGGATGCCGTCACTCTGGGCGTTGGGCTGTGCAACAGCAGCTTCATGCATCATGTGCTGGAGAAAAGCGAATTCAAAGACGAATCTCAATTCTTCCGCTTTTACGCTGATGAAGAAGTGGAGGGGACCagttccaaaaacaaacaacttcgCAATGACTTCAAGCTTATCGAAAACATCGTGGCCAAGTCTTTGTTGATACACCCCCAGGAGGAGGATTATGGCTTTGAGATTGAGGAGAAAAACAAGGCCATCGTGGTCAAGTCTGTTCGCAGGGGCTCTCATGCGGAGATGGCAGGGTTACAAGTGGGCAGGAAGATCTACACCATTAACGAGGACCTGGTTTTTCTGCGGCCGTTCCAGGAGGTAGAAACAATGATCAGTCAGTCTTTCTGCATCCGCCGTTCCCTCAGGCTGCTGGTCGCCACCAAGGCCAAGGAGATTATCAAAATCCCAGACTGCCCAGATGCCCTGTCCTTTAAAATCAGAGGAGCTACCCCCCCACATGTGCATGCTGTGAGGAAAGGTTCAGACGCAGCTGCGGCCGGCCTCCAGCCAGGGCAGTGTATTCTCAAAGTCAACGGCAACAACGTCAACAGTGCCAGCTACCTAGACGTCCTGGATCACTTCTCAGCTCATCGGACCAATCAGGAACAGCAGGAGCTGGGGCTGACTCAGTGGGTCTACAGGACCTTTGAAGATGCGGAAGAAGAAAGATCCTTGAGGCCAAGCATATCGGAGGCTGGATCCGACATGGAGGAGGATGAAGCCAAGCTTGGAGCAGATCCATCAAAGGCTTTGGGAAGGTTGAGTATCTCCGAGGACACTCCCCTCGTCAGCCTGACCGTGGACAACGTGCACCTAGAGCACGGGGTTGTCTATGAGTACGTCAGCATGCCAGGTGTCAAGAGCCACGTTCTGGAGAAGATGGTGGAGCCCAAGGGCTGCTTCAGTCTCACAGCCAAGATTTTGGATGCGTTTGCAGCGGATGACAGTCACTTTGTGAAGAACTGCAGCAGGCTGATCTCCAACAGCGACAAGGTGGTGTCCATGCCACAATACGAGTTCACGAACATCTGCCACACCAAGCTGGACTGCATCCGCCAGAGGATCTCCAGCTACCAGCAGGAGTTGAAGGACAAAGCCTGGCCTACGTTGAAACAAGCCACAACTAAATCTCACCCTCTCGGATGCATGGACTTCTGCCCAACCAACTGTCACATCAACGTGATGCAGGTCTCCTATCCCAAAAGTACTACCTCAGCAGGACGGACTTTCAGCATCCGTTTCGGGCGCAAGAATTCATTTTTTGGCCTCGATCCAGATCAGGCGAACCTGAACCCGATGTCTCACACCCAACACTGTGTCACCACCATGGCCGCCCCCTCCTGGAACTGCCACAGCCTGGAGAACGGGCTGCTGGAGACTTACGGTGAGATGGACGGGAGCCTGCTAGATACCAGCTCGGATGGTGGATCCAGCCAGACGGAGGGCGGCCTGAGCTTCCTGCTCAAACAGGAAGACATGGAAACCCAGGACGCCTACATTCGGCTCTTCAACCGCATGGACATTGCCGTGAAGGAAATGAAGCAATACGTTGCCCAGATCGATGTTCTCCTGTCCTCCATAACGGAGCCCACTGAGCCTGAAGGGTGCGAGCCCCCGCCGTCAGAAGAGACCCCACCCACATCGCTGGTTCCCGAGGAGGGGGACCTAGACAAGACCGAGCATGGAGGGATCAAGAGGGTCTGCTTCAAAGTGTCCGAAGATGACCAGGAGGACTCGGGGCATGACACCATGAGCTACAGGGACTCGTACAGtgaatGCAACAGTAACCGGGACTCCGTTCTTTCGTATACAAGCGTCCGGAGTAACAGCTCCTACCTGGGTAGCGATGAGATGGGATCAGGTGACGAGCTTCCTTGTGATATGAGAATCCCCTCAGACAAGCAGGACAAGCTGCACGGCTGTCTGGAGCACCTCTTTAATCAGgttGACTCCATTAACAGTCTTCTCAAAGGACCAATAATGGCCAAGGCAAGTGAGGCAACCAAGCACTTTCCAATGGACTACAGTCAAGCAGAATTCAGGCACACAGAGGACTGGACAGCACGCTGTCGGTGCATGATCCACAAGAACATCCAGGAAGACCCTTGGAACCTCCCCAACTCCATCAAAACCCTAGTGGAGAACTTGCAGAAGTTAGTGGAAGATGGAAAGAACCAGCTTCTTCTGGCTTTGCTGAAATGTACAGACACCAACCTGCAACTGAGACGGGATGTGATTTTCTGCCAGAGCGTGGTGGGCGCGGTCTGCACCTTGTCCGAGCAGTTGCTGGCGGCGCTCAACTTCCGCTACAACAACAATGGCGAGTACGAAGAGGAGAGCAAAGAGGTCAGCAAGAAGTGGCTGGAGCAGATTGCCGCCATCGGAGTGCTCTTCAATTTCCAGTCCATGCTTTCACCTCATGTGAAGGAGGAGCGGACTATGCTTGAAGACACGAAGGCTGCCCTGCTCGACCTGGACAAGGTCACCGTTTACTTCCGACAACTTGAAGACGAATGCCTGGTTGCAAATACATCAGTGTTTTACCACGTGGAGGGCAGCAGGCAGGCTCTGAAGGTCACCCTCTACCTGGACAGCTGTCACTTCTCAGAGCTGCCCACTCGCCTGCAGAATGGCGGCAGTCTGAAGTTCCACACAGTGCTCTTTACCAGAGctctggaaaaacaAGAGGGTGCAACCCAGCAGGACAGTGCCGCAATGGAGGAGTTTCAGCAGCGAATCAACGCAGTCTCACTGGAAAAAGTCAAATCCTACTATCGGAAGCTCAGggcCTTTTACTTGGAGAAATCTAATTTACCTACAGACTCCAACACCACTGCTGTGAAGATAGACCAGCTGCTGCGGCCCCTCAATGCCTTGGACGACCTGTGCAGACTGATGCAGTCCTACGTCAACGTGAAGCCCAGCTCTTCTGGAAGCGGGAACTCGTATCAGTCCGGAGTCAGTCTGCTGCCCGTCTCCTCAGAGCTGTGCAACCGGCTGGGTGCATGTCACATCGCCATGTGTGCCACAGGGATGCAGAGgtgcaCTCTGAGTGGCTCCCTGGAACAGGCCATGATTTTGGCGAGAAACCATGGATTGCTGCCACGATGCATTATGCATGCAACTGATATCATGAGAAAACAGTTGGCCGCCTCAGAGCATTTGGAGGATTTCGAGAGGATCAAGAGCAGAAACATTACCAGCTGGAGGAAGATATTCCGTGGCCGGAAGGAGCGGAGGTAA
>TU37999
CCCGCAGTTGGCCGCCTCAGAGCATTTGGAGGATTTCGAGAGGATCAAGAGCAGAAACATTACCAGCTGGAGGAAGATATTCCGTAGTGTCTTTGGAAACCTCAGAGGGCCTTATTTATGATGGAGCATCTTTAGCTGGATTAGAAAACAACCCCTTTTCTGGTTAGTCTTGGTACTCGCTTGCCTGGATGCTTCCGCCCAGCCAAACCCATCTACGTTATTTATTGCATGCTGGTGACTGAACACCAGGTAGTAAATAAAGCAATCCACTGATCGCCCGGCCTGCCACGGTTAGGATCTACACTGCCTTGAAGGAGCTCCTCAGCCCCCAGTCGGGGACATGCAGTGAAAATGCCTGGCATGTCTACAACTTCATTTATTGAATGCGTTAGAAGTTTATAGGGTGAATTTTATTCCCATACTGATCAGGAAATGAAacttaacaaaagaaaagaaaaagttaaacattcttatatttatgtacagtaaTCACAATCGTTTTcccattcttttattttaatttttaattcttttttaaaGTGATCAGCtatatgataatatatatatggtaatgTTGGAAAAGACAGCTGCAGGtaattcaataataatcaaaggTATTTTAATGACTATAAAAAGCTGTTCAAACCTTTCTTTCTagttgcttttctttatttttctagaaATAAGGCCAGTCTGTACCAATGTAAATAGTGATACAAGAGCTTCTGTGGCACTGGTGCACTCTAAATATCTTGttagttcttattttttttaattgtaagtaaatataatttaattttcttttcttttacttgAATTATATCATGTTATAACACGCTGAACATGCATAACAATATAACAACGATTCTCGGATCTGTTGAAGTGTTCATATAATGTTCTTCACAGGAAACAAACTGAAGTGAACAAAGGGAGATATGAAGTATACAATGTGTAACGTGTCCAAGGTTGTTTTAATGATCGTAtgtttttgtacatatttataacgagattttatttgtgttaagaGGACAAATCTATATAGTAAGTTTATGCTCTTAAAGCAGGGAAACAGTGCATTGTTCTAATTTAAGAAAGCATTAAAgtttagggaaaaaaacaagttgttaaacttattattatttttttaataatattgtacCTTTGATTTGTATAAATCGTAAGACAGCCTTCTTAGTTTTAGGTCATTTTGgtgcattaacaaaaaaagttttatcaTAAAGAAATTTCAGAACTTGtgccttttaattaataaaaggctTTTAAGTAATTGGTTAAGATGTAATTGTTGCTGAATACTGCCTTACAagggctttttttctttcattttttctttttcattttttttgttggtttgttgtttGGATTATACACgtttacagtatattgtatgTTTCTAAACATCACTGTAGGATGACATCTATTCAATCTTCATTCCTCGCAGTCACGTGTGGTTTTGGTGGTTTGGGCATCTCTGCAAACATTGTTCCATTGCTGTTTTTGAAGCtattaaaacactgcagttaATGGGACCAAGTCAGCTAAATCTTTCTGGCAACTCTTATCAAAACCTGACAGGAAAGAAGACCCCAATGTGCCTGTTAATAACCTGGTCCTCTTGGAAAAGTTTGAGACCTGTCCATTTTTGATACTAAACCTTAATGTTGTTGCCGTGTGAAATATTACAGTGGGATTCTGTGATTGCAGAGTTTTTTGTCTATAGCGGCCTGTAAGGATTGTCTGAGGATTGACTGAGGACTGTAATCCGTTTAGCATAAGTGGTATTGCTCTCCTTAGCTGATTGGCTCTTTCCACACGATCTCCACAAGTATTTAGAATACAGCACGATTCCTGACCTGTGTAACCTGTGTATTTTACCTTAGTAGGGTCTTCAATATTCATATTCAGAAGGTCAAAGTGCAATCCAGACACATTAAGTTATTTCTTGGCAAGATGTACTTACTGGTTGGCAGTGAACATAATTGTCACTGCGTTTCTTCTCATACTCATCTCAGGACATTACTGTAAGTTACTGTAAGTGGAGCACAATAAAATAGGgaagttaaaatatttacatatatttaaagtcATTAAGTGGAGGGCgcaatttaatttaagtgccattatttatttattttaattgtatgagAAGATCTGCAGTTCCCACAGAGTTCCATTTTAAGAATGGTGCTTCGTTGAACTTTCCCCTGTTGAACTGAAACCCAACAAAACGAAACAGAAAAGTGCCAGTTGGTGATGTCATGCTCTgctttgtggatttttttttatttttttttattttttgaagaatCATTCTGGTATGAGTAGCTCTTGTTCTTCCTACACCATTCCAAACCTAACTTAATTACTCCCCAGTTTTCATAATGTAAAGATCATGATTAAGATGATTATGATTCTGAGAGACTAGTGGCCTTCATCTGACAGTGGTTGATTTTAGTATTTAATGATTTGCAATTGACAATCTACAGTTTACTGGTTGGCCATCCCAGTGTAGTAGATGTCGGctgcttatttaatttagttttatttaattttgtgttctGCCTTGTTATCATGAAGACACCAGAAGTTAAGTGTTTCCTCTGTGTCAATCATGCAGATATCTGTAGTATTAtggagagagtgtgtctgtatttcaATCTGGGGAAGAAATGACTGTCAAGTAGCAAGTTCATATGAAGAGGACTCTTGCTTGCATCATGCTGTTTGAGTCTGCAATGAAGGAAAATCAATTCCACATACAGTGATCctgtatttaaaacaagaatAGACATGTATTAACAGGCTTTAGCCATTGTTTGTCTGCATATGATACTAAATTTTCCAGTGGAATACTGTGCTTGTATattaacagaaaacattgtTCTAACAACAGGAATCATTGTAAAGGCAAATTACAGCTGAACTACTTTCACTGCTCCTGCTAACTCAAATTGGCAGAACTAGCctgcaatgttattttaggtggTGATGGAATTAAAGGATCTCATAGGCTGTTACACTCTGCTATTGTAATTGGGTTAAACGAGGAAATTGATGCACAACACTGCTTTATAAAACTCTTTGGCTAACACTGTGACCGAGGACTGACaacaagggggtggggggaagctGAAAATGTCCAAGATTTGTACTGCAGGAAGGAAATAGAATTGTGTAGAATTAATGGAGATGTACGTTTAGCTGTTACAGTACAtatcatttgtcatttttgggttttgtttttaattattttcggGTTTCTACTGatgaatactatttttttttcttactaaTATAATAAGGGTTCCATTGttcatacaaattaatttgatctTTTTAATGCATACTTGTATTTCAGAGTTTCAACTGTGTGTCCAATGTTTGAAGTACTTGGCATCTGTCTTTCAGTTACTGAGGAAATAAAAGCTGTATTAATTCAGTGCATTCCTGATTACGATACCCCTCCTTCAAGGTCAGACTTAATGTCAAGAGTTTTTATATTCAGGACATTTCATATTCAATAAACTGTATAAAGAGATGGGCAGTGTTACtggaattacaaaataaaacttgcaGTTTGGTTGTGTGACAATAACCAAGTGGTCGCTCACATTGAGAGTTTATAGGATGTGCTTTGATTAAAGGACATGTCCAGTacttaaaacttttttattattattattattattttcctctaattatgcattattgtacatacattgtttcatgtttgtAGTTGTGTGTggtctataaaaaataaatattgtacagaaagagttttaaaaaaatgttctagGTATTGTTGCGAATTTAACCTTTTATTTG

Function

symbol description
prex1 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within nodal signaling pathway. Predicted to be active in plasma membrane. Is expressed in endoderm. Orthologous to human PREX1 (phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1).

NR:

description
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein isoform X1

GO: NA

KEGG:

id description
K12365 PREX1; phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchanger 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008334 True 4716 mRNA 0.52 38 52991285 53087480
TU37999 False 3846 lncRNA 0.35 2 53079007 53082898

Neighbor

gene id symbol gene type direction distance location
AMCG00008336 LOC106565273 coding upstream 38160 52918420 ~ 52953125 (+)
AMCG00008330 LOC106572151,LOC106524167 coding upstream 382737 52590531 ~ 52608548 (+)
AMCG00008327 NA coding upstream 425140 52560336 ~ 52566145 (+)
AMCG00008328 snta1 coding upstream 439798 52537280 ~ 52551487 (+)
AMCG00008326 NA coding upstream 507984 52447949 ~ 52483301 (+)
AMCG00008337 kcnq2 coding downstream 185 53087665 ~ 53087964 (+)
AMCG00008333 LOC107734000 coding downstream 158839 53246319 ~ 53258582 (+)
AMCG00008338 arfrp1 coding downstream 194985 53282465 ~ 53295665 (+)
AMCG00008342 LOC106565270,LOC106583652 coding downstream 310780 53398260 ~ 53414383 (+)
AMCG00008345 NA coding downstream 333383 53420863 ~ 53431777 (+)
G30297 NA non-coding upstream 613431 52377459 ~ 52377854 (+)
G30283 NA non-coding upstream 654018 52337044 ~ 52337267 (+)
G30269 NA non-coding upstream 702162 52288890 ~ 52289123 (+)
G30219 NA non-coding upstream 1202138 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 1403740 51570722 ~ 51587545 (+)
G30300 NA other upstream 608867 52381341 ~ 52382418 (+)
G30299 NA other upstream 612509 52378329 ~ 52378776 (+)
G30232 NA other upstream 889761 52100762 ~ 52101524 (+)
G30166 NA other upstream 1563230 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2634881 50322713 ~ 50356404 (+)
AMCG00008335 NA other downstream 23523 53111003 ~ 53148134 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location