AMCG00008340


Basic Information

Item Value
gene id AMCG00008340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53276379 ~ 53281571 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008340
GAGGGTTTGACCTCTCCAGCCGAGCCCTCAGGAGAAGCTACGCAGGCGAGCTTGGATGATGAGTTTGCGGCTTTTTATGCTTCCGTTGGGGGGCCTTCGTGTGGAGAGCCCTCTGCCAGTGACAACACAGCTTTCTCCCAGGGCTCCAGCCCCAGTCCTGCTCAGGCcagcgaggaagaggaggatgaggaggggCAGGAGGAAATAGATGATGAGATGAGTGGCATGAAGGTGTGTGCCCCTTACCGCACATCTTGGGGAACGCTGGAGTACCATAATGCCATGGTAGTGGGAGCGGAGGCCTCGGACTGTGTGCGTGTTTTATACGTCCACCCGACGCACAAATCCATGAAGCCCTGCCCCTACTTCCTGGAGGATAAGTGCCGCTTCGTGGACAGGTGCAGGTTCTCCCACGGAGAGGTGGTGTCCGTGTCTGAACTGAGGCAGTTTGAGGATTCAGACCTCAGTTCTTTCCAGGAGGGATCTGCCTGTTTAGCCAGACATGAGGATGGCATCTGGTACCCAGCCACAATCACCGATATCGACAGCGGTTACTACACGGTCAAATTCAACTCGGCTTTGCTGAAGGAAGCAGTGGTGGAAGCTGATGGCATTATCCCCCCACTGAGGAAAGAGCACCCCTCCTCGTCCGAGTCTGAAGATGATGACATGGTGGAGTATTCAGCCTACGCCAAAGTTGTAGATTCAATGTCGACAGAGTCGGAGGACTGGGCTGCTCCCTGTAGCTCAAGTTTTGGGGGCTGGGAGCAACACACCAGAGGAATTGGATCCAAGCTCATGGCCAAAATGGGTTACGAATTTGGGAAGGGCTTGGGAAGGAATGCTGAGGGACGTGTGGAGCCAGTGCTGGCGGTGGTTTTGCCCAAAGGGAAATCTCTGGACCAGTGTGCTGACATCCTGCAGAAGAAAAGGCTGGGGAAGCTCGGCAAGGACAGGCCGGGGAATTCCAGGAAGAAAGGGAAATGGAGGTCAGGCCCTTCCAAAACCCGGACCGATGTTTTTGACTTTTTGAATAGCCAGCTGGGTGGTGAACGCCAGGGCGATTCGGCTGAAGCAGGTGCCCCAGCCGAGACGAACAGTAAAGAGACCTACAGGGGAGGAAAGACGGCTAAGAGGTCTCTCAATGTCAAGCTCTACCAAGCCTCTGGGAAAGTTGCTCAGACCGAGAGGGAAATCAACAGCATTACCAAGTCCCTGAGCAGAAACATGGGAAGGGACAAAGCTATGACAAGTCACCTGGAAGAGAGGCTGTCGGCAGCAAGAAAGCAGCTGGTCGTGCTGAAGGAGCAGGAGGTTAGCATACAGAGGGAGCGCAGGAAAGCCGATACACATAAGAAGATGACTGAGTTTTGATTTTATCAGTTCATTAcccctttattttcttttttacatttgcttttgtgttCATTCTTGTAACTGCAGGACTCGGCGATCCCACACCTGcccatgattttgtttttctccgtCTTCCTCGTAACCGGAGTGATGTGTTTGCATAATTGCAGTCagctgaatgtgtgtgtgtgtatctgtatatatttttgttttaaaaaggaaaaaaaatctaaaagtgtTTGTGGTATAGGAgcatgatttttttctttctttcttttcttcttttgggTTCCATCAGTAAATTGGCTCACAAAATTAGCTTTTCTTTCGTTCCAGGGATTTTCTCATTGTGGGCTCTCCAGCTTAACAGCGCTGAATTTTAAAGCAAGTTCTTTATATAGTGCTCTTTCTTTCCATGTTACCAGAGACACTATAGAAGAGCTTGAAATTCTGGATGAAACCCCTTCAGGGAAgatctctaaatgtatttttttcttttgagtgctttttattttcttctgccgCCGCTGTAATTGTGCCCCgagaaatgcagagagacaGGTTACATTGAGCTGACTCGCAATGGGAAATTTGCCTGTTTTTAGGCTCAGACAGAATTCTGTGACCGGATTTAACCCCTGAAGCCCCccgttttttatttcttattttactattttgaaagtgaaacgccaacttttaaaaatgtacttcaatGTTTGTTCAATTGAACTGAAAACAGGCAGATGCAGGCTTTGTCCTCATCAGCTCTGTGAAATGTCACACTAACACTGTCAGTCGtgggtgctgtgctgtacttGGGGAAGCTCCATGCTGCGTGAGTGCCAGACAACAAGGGAAATGCGACTGGGATACCAAAAGGAATTGCTTTGTGACGTGAATAGAGTTCTGCCCCACTACGGTTATTGTCACGGCATTCTGTTATGGCTTCTTTAATAGTCTGATGAGCAGTACCTTGCgtgatgatgttcatgatgtcattaaacaagaaaaaggtCACACTGTCTCATCTGTTTCATTTCACAACAAAAGAAGAAGCCCTTTTAAATTCTTCCAGAAAAACTGATGACaatatcttgtttttttgtccagAGTACACCTGCCTCGAACATCTGTCTATGTAAACGTTTCCAAGTGATGACAA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008340 True 2518 mRNA 0.48 6 53276379 53281571

Neighbor

gene id symbol gene type direction distance location
AMCG00008332 NA coding downstream 626817 52626515 ~ 52649562 (-)
AMCG00008331 NA coding downstream 692354 52572120 ~ 52584025 (-)
AMCG00008329 cbfa2t2 coding downstream 771057 52493341 ~ 52505322 (-)
AMCG00008324 LOC106566898 coding downstream 850708 52388795 ~ 52425671 (-)
AMCG00008323 NA coding downstream 888009 52386360 ~ 52388370 (-)
AMCG00008339 NA coding upstream 18905 53300476 ~ 53303340 (-)
AMCG00008341 NA coding upstream 24227 53305798 ~ 53357218 (-)
G30417 NA non-coding downstream 128206 53145185 ~ 53148173 (-)
G30409 NA non-coding downstream 193477 53079584 ~ 53082902 (-)
G30276 NA non-coding downstream 949988 52326161 ~ 52326391 (-)
G30275 NA non-coding downstream 950342 52325705 ~ 52326037 (-)
G30270 NA non-coding downstream 987256 52288890 ~ 52289123 (-)
G30479 NA non-coding upstream 130423 53411994 ~ 53416431 (-)
G30486 NA non-coding upstream 149381 53430952 ~ 53434101 (-)
G30505 NA non-coding upstream 205270 53486841 ~ 53491107 (-)
G30501 NA non-coding upstream 218168 53499739 ~ 53506725 (-)
AMCG00008325 znf341,LOC106566899 other downstream 891812 52381056 ~ 52384567 (-)
AMCG00008318 NA other downstream 937282 52329236 ~ 52339097 (-)
AMCG00008298 NA other downstream 2748343 50523987 ~ 50528036 (-)
G30054 NA other downstream 3002196 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 3222277 50053825 ~ 50054102 (-)

Expression


Co-expression Network