G20465



Basic Information


Item Value
gene id G20465
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 423334 ~ 424778 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU25486
TACAGAACTGCACAAGGTCTACTTCAACACATGCAATGATTTTTAAAGGTTCATTTAAAGCAAGCTGATTTCAGTGATACCAATGTTAAAggatgaaaaacacattcacagcTCAAAATCCCAATCCCAAAAAACCTTGAAGCATTActaccaaagtcatgtttcaaGAACATCACAATATTACATCACAACACCAAAGAATGGCGAGTGGGAATGAAGGGACTAAGGGAACGTCCTCAGAGAAGCCGACATGACAACACTGTGGAATGGAAGCAGTTTAAGTCATTTAAACAGGACGTTGGCTAAAAGGCAGTTAGCTGATACTCTTCTGAACATAATAAACCTGTAACTTAAGCACTGAAGACTTCATAATATTTTGATGTAGAGACTAtactatatgtattaattaaatcaataatttatcCTTAAGAAATTTACAAAAGTATGAAAATACTTACAATCAAAAATTGACTTGATATTCAATAAGTGCAGAAGTGTTGGAACACAGGTTAGAAGCGACACTCCCAGTGCTGCAAAGGAGAGCAGCAAAACACATATATGTCTGCCAGAAAAAACCCAGCGCTTTCACTTCTGCCGTAGCGTTTGCAGATCCACTATCTGTGCTGACGATGCATCTGTACTCCCCTTGGTCTTCAGTCCGGAGATCCTTCAGTTTTAAGGAGTAGTTTCCTGAGCGGATCTCCTCAGGGAAGAGCTCGGCCCGGCCCCTGTAGCGCGGGTGCTGAGACTCAGGCCAGCTGTCTCCCTCTGAGAACAGGTGCACTAAGATAGAGGACTCTGTCTTTCTCCACTCCACCTCCAGCTGCTCCACAGGGACGTGTATATCCACAGAGCAGTTCAGAACCACCTCTCCTCCAGCGTGGGCAATCACAGGATGACTGGCACCAGTGACAATGAGACGCTCTGGAAAATGATATCAGGGAGTAAGACACTGTCGTGAGAAAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU25486 True 966 lncRNA 0.43 2 423334 424778

Neighbor


gene id symbol gene type direction distance location
AMCG00006996 NA coding downstream 43444 365990 ~ 379890 (-)
AMCG00006995 NA coding downstream 94623 317616 ~ 328711 (-)
AMCG00006987 ddb1 coding downstream 181874 226095 ~ 241460 (-)
AMCG00006988 NA coding downstream 224505 195304 ~ 198829 (-)
AMCG00006978 NA coding downstream 280153 140536 ~ 143181 (-)
AMCG00007002 NA coding upstream 39791 464569 ~ 472311 (-)
AMCG00007003 NA coding upstream 49080 473858 ~ 478272 (-)
AMCG00007004 NA coding upstream 63877 488655 ~ 509749 (-)
AMCG00007009 NA coding upstream 128537 553315 ~ 554154 (-)
AMCG00007010 NA coding upstream 130296 555074 ~ 565774 (-)
G20446 LOC103368535,LOC104922780 non-coding downstream 69863 346274 ~ 353471 (-)
G20423 NA non-coding downstream 106220 310713 ~ 317114 (-)
G20424 NA non-coding downstream 113508 308009 ~ 309826 (-)
G20412 NA non-coding downstream 116474 304589 ~ 306860 (-)
G20395 NA non-coding downstream 163854 259091 ~ 259480 (-)
G20501 NA non-coding upstream 121278 546056 ~ 546501 (-)
G20507 NA non-coding upstream 163547 588325 ~ 588602 (-)
G20510 NA non-coding upstream 170699 595477 ~ 595770 (-)
G20604 NA non-coding upstream 394197 818975 ~ 823764 (-)
G20607 NA non-coding upstream 404319 829097 ~ 829524 (-)
AMCG00007001 NA other downstream 9208 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 61040 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 163098 259583 ~ 260236 (-)
G20388 ddb1,LOC107681355 other downstream 190840 230324 ~ 232494 (-)
G20609 NA other upstream 421151 845929 ~ 917829 (-)
G20630 NA other upstream 527458 952236 ~ 953062 (-)
AMCG00007059 NA other upstream 1717897 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 2220127 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 3051290 3476068 ~ 3500670 (-)

Expression



Co-expression Network