G20726


Basic Information

Item Value
gene id G20726
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1378456 ~ 1381110 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU25839
ttgcattccttGCCTAGAGATCCAGTTTGCTTTTGTACTGATTTTCTATGAACCCAGGACATCATGCCTCCTTGTGTTAGTCTAATTACAGTCATGACTTCAAATTACTGATGCGTTAAGactgttgtattatttatgattatggGATTCAATACAGCAATAATTTGTATCCAGGTTCCCTGACCAGCCACATTTGCAGCCTAAGAACAGAACAACTGTGGATAACTTTTGTTAGCAGGAATACCTGTTGTCCTATCATACCTGACATCATTAAAATACTATGCCAATACTACATTTGTATGGTAACTGaggtttttgtgaaaaaaagtattaaacttCCTGTAGGTATGGACAACATGTACATTTTAGACTGAGTAGATGTCTCACCTTATATAGGTATACAACAGGGAAGGAAGTCAGACTTTAAAAAGTTATGCAAAAGATAAACATGGGGAAAGTCTGAATTTAAAGTTGTTCTCAAACGTTTATCGCTATACAGTTTATGCAGCAAACAAGACGCTACAAAAGAGCATGGGCAAACACAGCTGATATAGGCTCCAATTACCTCCTCTTACCTCAGAACattgaaaggaaaatgttgACTTTATTTGGGTATTTGCTGTTaaggaggaaaataaacagaataaagcaATGGATTGATGGGGGGTAAAAGGTACAGTATATGAAAatagatttacaaaaaaaaagtaagaataTCAAATAAAGATTTGAAGAGGTTATATTGGtaaaatatactgaaaaatTTGATAGACTGTGCATACAgtatttgcagttttcaaataAGCACACAGATAAATAGGCCTGCGTTTGGCACGTGTAGCCCATATTGAATGTAACCCTTGGGGTGAACTAGTAGATTATTTTTAAGGGATTGTGAAAgctaaaacattttacagaattcTCTGATAGTCTGTCTCAGTCAGTAATGAGATCATAAACACTGTAATATGCTCAGATTAAGAAAGGGATTATGAGGTAAGAAATGAAGGCTTCAGCACAGATTTAAGCAAAGAGCCACAGTCTGTGGCAAATAGCCAGCTAAGACTATCAGATTGTACATAGCACATTCTTTACTGAATATTTAGCCATGGATCTGCCCTGAAAACAAGTCAAAGACTCACTCTAGTAAAACAGTCAGAAAAGCCATTGAAAGCACAGACAATTGCATAGGAATGGCAGTCATGTTAAATGAATGATTTGACCAACAGAAATGGATAACATCTGTAGTAATAACAGGACAATAATTGCAGGTGGCCATGTATAACAGGTGAAATGTCAGAACCCTTCCGgaagacaaaacatttaaatgggattctacaaaacaaacagaaactaaaatagACCACCTGATAAAATGAGTAATGGTCCATATTGCTACACCACCATATAAGAAGTTGATTGACATAgggcagaataaataaatgggtgTACTGTGTGTAAAGTTGCATAAATAGCAGGATGATTTAAGAAAGCACAAAGCCATTCAACCCACTGGAATTGGTGGCAAAGAATGattgaaaacaactgaaaatgacACCTGGAATGATTGATGAATGCTAAGATGTGAATGTAATACTCCaggtaacaaacaaaaaaatgtcccCTGCTTAAGTATAGCCTGCTAGGGCAACACATATTTTCAGTACGTTATTCCTATGgaaactgtaatttaaaacaagttctAAATGTTGTAAGACATGCCCCACTGATCGTGTTCCCTGTCACACATGTGTTCGGGATGTTTGCATTCATTATCATCACAGATGTGAGATTAATAGCCAGAAACCTCCCTCCCCTCCATATCTGTTCTAGGGGGCACTGAGAGATAcctctatggcaagccaaattgtcatttagagatatttcaaatacaattcaagatatcttaaactgaattgcagatatctcagactagctccatttcaagatatctcaaaatgacttcctgtgaaaatgttgtatgttttgtatgaacttcctgtgtattttaagatatctgaaataggacaggaggtcaatttggcttgccatataccTCAGAGGACCTCCATTCTGTTATTCTGACAGTTTCGTACATGTTACCAACCAGTCCTGTGAGTTACCAGAGTCCCTGCACAGACTCACATACAATTACTTCACATCTGcttggatttgtttatttggcaGACGGCCACTTCCCCAGCTGCTTATTGAGGACTGTATAAGAGTGGCCCTCTATCGAGTCACAATAGGAATGGACACGAAAATATCCTGCAAACTATTGTGTGTGAGCGGTTAATTTCAATAGGACAGAGTGGCATTGCTCAACCATAGTTCGAGACAGTCAGAATCCTCTCGAGctattatttcaaaatgccaGCAAACCTGTTTAAAATACTAGCTTGCACAACATATTATCCTGTTTACATGTTTTCAGTTCGGATGCGTAATCCTAATGCTATGTATTGTAACTGTCTGTAAACATCCATATGTTTTAGCTGAACATGATACACTTTGTGGATTTGAGCCTTTTTAAGTTCAACCTTTTTATTTGACTTAATCCCTGATTGTACATCCCATTACACTGTGTATGTGCTGAATGTAGTACGATATGTCATGTTTTGTCACTTATACTTTAGAAAATACAAACCAATA
>TU25840
ttgcattccttGCCTAGAGATCCAGTTTGCTTTTGTACTGATTTTCTATGAACCCAGGACATCATGCCTCCTTGTGTTAGTCTAATTACAGTCATGACTTCAAATTACTGATGCGTTAAGactgttgtattatttatgattatggGATTCAATACAGCAATAATTTGTATCCAGGTTCCCTGACCAGCCACATTTGCAGCCTAAGAACAGAACAACTGTGGATAACTTTTGTTAGCAGGAATACCTGTTGTCCTATCATACCTGACATCATTAAAATACTATGCCAATACTACATTTGTATGGTAACTGaggtttttgtgaaaaaaagtattaaacttCCTGTAGGTATGGACAACATGTACATTTTAGACTGAGTAGATGTCTCACCTTATATAGGTATACAACAGGGAAGGAAGTCAGACTTTAAAAAGTTATGCAAAAGATAAACATGGGGAAAGTCTGAATTTAAAGTTGTTCTCAAACGTTTATCGCTATACAGTTTATGCAGCAAACAAGACGCTACAAAAGAGCATGGGCAAACACAGCTGATATAGGCTCCAATTACCTCCTCTTACCTCAGAACattgaaaggaaaatgttg

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU25839 True 2655 lncRNA 0.37 1 1378456 1381110
TU25840 False 601 lncRNA 0.37 1 1380510 1381110

Neighbor

gene id symbol gene type direction distance location
AMCG00007035 arntl,arntl1a,LOC108439331,LOC105895625 coding downstream 93429 1265591 ~ 1285027 (-)
AMCG00007036 NA coding downstream 170420 1186641 ~ 1208036 (-)
AMCG00007032 galnt18,galnt18b,LOC106587200 coding downstream 264969 1094745 ~ 1113487 (-)
AMCG00007030 LOC103364536,LOC102291832,LOC101472382,LOC102208148 coding downstream 404662 965506 ~ 973794 (-)
AMCG00007031 NA coding downstream 477968 898264 ~ 900488 (-)
AMCG00007041 tead1,LOC105016886 coding upstream 13246 1394356 ~ 1411242 (-)
AMCG00007039 LOC108441494,LOC103379680 coding upstream 51313 1432423 ~ 1435307 (-)
AMCG00007040 parva,LOC108271331,LOC106587194 coding upstream 96142 1477252 ~ 1500014 (-)
AMCG00007043 NA coding upstream 123191 1504301 ~ 1518409 (-)
AMCG00007045 NA coding upstream 151349 1532459 ~ 1570344 (-)
G20676 NA non-coding downstream 386457 990555 ~ 991999 (-)
G20614 NA non-coding downstream 441954 906596 ~ 936502 (-)
G20617 NA non-coding downstream 458349 914130 ~ 920107 (-)
G20612 NA non-coding downstream 474721 902919 ~ 903735 (-)
G20607 NA non-coding downstream 548932 829097 ~ 829524 (-)
G20795 NA non-coding upstream 295194 1676304 ~ 1730479 (-)
G20802 NA non-coding upstream 341446 1722556 ~ 1727167 (-)
G20870 NA non-coding upstream 790794 2171904 ~ 2172483 (-)
G20908 NA non-coding upstream 818943 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 905714 2286824 ~ 2288618 (-)
G20630 NA other downstream 425394 952236 ~ 953062 (-)
G20609 NA other downstream 460627 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 964330 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1016162 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1118220 259583 ~ 260236 (-)
AMCG00007059 NA other upstream 761565 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 1263795 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 2094958 3476068 ~ 3500670 (-)
G21426 NA other upstream 3660549 5041659 ~ 5049520 (-)
G21429 NA other upstream 3675677 5056787 ~ 5057406 (-)

Expression


Co-expression Network