G20802


Basic Information

Item Value
gene id G20802
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1722556 ~ 1727167 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU25954
AAAATATCTTGATATACACCATAACCACtatattgtgaaatgtaaactatatattattttaccaaATTTTCCCAGTGGAAGATATTCAACACTTTAGGTTttcctgctttgttttcattaagtATATGATCATGTTGAACCAGACAAAGTGTATGACCGCTTACTTGTTCAGATGTTTCCGTGCTGCAGGAAGTCCAGAGAGCTCTTCATTCAGCACATATTTTTTGGTTCCCATGCAATAATTCTCCATGTACTCAGCCCAGTGTAACTGCCTGACATCGAAGTTAAAAAACCTTCTTGTCCTCCGTGTTCAGCTGGTTCAGAAGCATGGTGGTGTTCTCAGTGTTCCACACCCAGGAGTGGCTGGTGAAATATTCCAGCAGCATCATGGCTTTGTGGAGGCGGGTGATCGTTTTCATCATTCTAGATCATGTCAAGTTACACAGAAGCAAAATGCATCATAAACAGTAACAAAGCGAACACCCCAATTCTCCATTTCACCAATCCAGGGTGGATGTCTTTTAAATAGCTATATAAAATCTACAAACAATTCTGCACCATCTTCTAAACATACTGGATTCTGTTAAGACGCTCCTAAAATGTGCTTGCCATGACAGGAATCAAAGCGTTGACTTGCCTATGGTAAGGAGGTGAAATCTATTGCGCACACAGCTGTCAAGTCTCAAATGCAAAAATGGCAAAGTTATGTAATTAGTGTGCAAATCAATGTCTGTTATGTTTAAGAAATACAGAATTGggagtttttaaaatgtaagaactAAATATAGTCACACACAGAACAACTGAAATGCTGGTAAATtgcaaaccattaaaaaaaaaacaaaaaaaactattatttaggaaaaatggggggaaaaaatatgatAGTTTACTAGAGCGTTTACttcaactacaaaaaaaatcaccatGGAGAATACTATATTCAATAACAGTGAATCCagtattttgaaaattgaaacagACAGGAGGTGCAcagctattttatttatttttaaaaagagctTTTTATGCTAGTAAATATTATAAAGCTGGACTGGTTTACTGGAGCTAGTCAGTTTTACATACAgccttcagaaaacaaatacaaatcaatgcTCAAGGTATTCCTGTCCCAACTTGACATCTGTGTTTTCATGTCCAAGACTACATATAAAGTGACACTATGCTTAAGAAACATATACACCATGTCCAGTGGAAACAGGAAGACCTGTAAAAAGTTGGAGAGAAAGTGAACCATTTCAAATGTACTCATATTTTATGCTAAAATGCCACTGATTTATTTAAGACGCATGTTAATTTGATTGGCAAAATACACTTTCCTTGTTCACTTCCCCTCCAAAATACACTCCCATTCTCATGGACCTCAGTTACAAATAATACTAAACTGCAAACATCTGTGAAATGATTGTAATGAAACAATGTGAACATTTTTCTAGTCCTTCCAAATCAGCAAACTCTACTCAAAAGCCCCCCTTTTCAATGCGTGTTATTTCTTTTGAAAGGTGACCAATCCCTTACATTTCAAGAGGGGGGCAGAGCATGAAGGGAGGATGGGGGGGGAAAATGATGTACACATtcaaacaatgcaatacaaacgAGGGGACATGAGTTAACAAAACAGCATCCCTGAAAACATTCATCCTTCATGTTTGCTCTGCTTAGTTATTATAATTTAGAATGCATTGTCAGGTTTTAAATTACTACATTTGGGCCTATGTTTCTATCTAGAGGTGATTAGAAAAATGTAACTAAAGACAATGGGAGCTGTTGATTGCTGCAAATTGTGATCGAGATATAGGTTTGCCTTGCCATGGACAACTGATTTTTCATATCAATCAGCGCTCTTTTCATTGAGGGCGGCCAACAGATTGCCAACATGCTTGAAAATCATTTGCTTTCTTAAGAATAAGGTTGGACTGATACCACTTTCTACAAGACACTTCTCACTTAACTCTAGTACCTAAATCTGAAATGCAGGGTTTCACAAGTTAAACAGGCAATCAGTTTTTAAAGTACTCATGATAAACAACTGTTATTCCCATATGGTGCTGCCACCTTCAAATATACTGcagcacattttattaaatagtgCGTCATTCCTTAACCAGAGAATGGATTTCATCAAGTGAATTTCCTTTGTTCAAGTCAGATTCAGAGACAAATTAATTTAACGTCTTTCTATAGCAGttctataattataatacaattaatgttAACAGTACTACTGTAAttccaaagaaaacaattttTTCCTAGATATTCGATAGCTAAGACTTCACTATAAACtggtttcttttttcagatactattaaaagcttttcattCTTAGTGCGCAATTTTGCATGGGTTTCATGAATAACTCAAAAAAGCAATACACTTGAACCCGACAAATAATAAGCAAGACATAGATTTTACATATATTAGTCAAAGTCAAATGCTTTCctgtacataaaaatgtattaaaaccaaGAAGTAGGAATCTCTTCTGTGGCCAATCgatttttcctttcttaataATCTTAGGCGTAGTCGGTGAACATTAATTGAAAAGGTAGCTAAACCAAGATGGTGTCCTCTGTACAAACAAAGTCTCTGGTATTGGTCCAAAAAAATATAGAAGGCCAATAAAAATCGGGAAACCAGCCAATATTATCAAATGCTTGGTATCCTGTATCAGTCAAACCCTACTGAAGAATATGCAAGTCCCTCAGAACAGTGCCAGATTGAAAGAGGAGGAGAATGGCACTGTAGCAGATAGTTTTGAGGTCACGCCTGAAGACTTGATGGCATGGCTTACTTAAGGAATGGCTTCTGTGTTACTTTGACCCAACAGAACCAACACGGGGAATGAAATGGCATTAATTTGCATCACCAAAGTTCAATCTGATCACACtcaatgcaaaacaattcaACTGCATGGTTTTAGTTACTTCGTGGGAGATTATGGTTCTTTGTCCAGTTCTATTCCCACAATGCATTAGTTTAATTATCGGACGACAAAGCCATATTCGACATGCTCTCTCTTAGGAAGCGAAACCATTCCCATGCGTCATTTCACAGCAGTGTTAACAGCATGATGCCAAGTCCAATGCCATGAAGTCAAGCAATCTTTGCTTGCCTCCTCCACCACTACAAAACCAGCACCAGGGTGGACTGCAGCACTGTTCACCTTACCGGGGTTTCTGACCTGTCAACCTTAGATACCCGTCATAGAGTAGTGCAGGCACTGTGTGACTGACTGTGGTCCAGTACTGATTCGTAAAGGGGTTGGACCGGAGGTTAACATTGGGGCGCCTGAAAGCCTGTTCTAAGGGGTTCATCTTGAAGGACACATTTACATAATACtctgcagaaaaaatatatcagagCTTTAAACatgaacagatttaaaaaaaaacaaaaaaaaaaacaggccatACAGGTAAGAATGCAGAACCATGGCAAGTGGATTGTCACACCACCTGTAGGAAGCTGATCCTTCAAAAGAGGATTTGGTCTCTTTTGGCAGTGTTATCTGCCCAATTCAGAGACATTGTTCATCCTTGTGGTTATACATCCTTACCCCTATGCATCATCAGACACATGAATACAACAACATTGGACTGCACTGGAAGGGCAAATGGGCTGAAAGGATAATACAACAGTGGGCTAAGCAAGTCACATTTACCTTGGTGTTCTTCCTGTTATCCTGAGGTAGAGATCATATAGGAATGCTGGTGCCTTATGGCTTACAGCAATCCAGTACTGATAGATAAGGTGATTGGATGTGAGATTAACATTGGGCCGTCTGAAGGCCTGCTCGAGAGGATTCCTCTTGAAAGTGGATATAACATGGTACTCTAAGAGAGAAAAATGTTGCAATAGTATAAAGTTTTCAAAGTATCTCTAGCCTCaagtttggaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25954 True 3925 lncRNA 0.38 2 1722556 1727167

Neighbor

gene id symbol gene type direction distance location
AMCG00007047 NA coding downstream 24723 1659504 ~ 1697833 (-)
AMCG00007046 NA coding downstream 69244 1637115 ~ 1653312 (-)
AMCG00007044 usp47 coding downstream 95897 1599935 ~ 1626659 (-)
AMCG00007045 NA coding downstream 152212 1532459 ~ 1570344 (-)
AMCG00007043 NA coding downstream 204147 1504301 ~ 1518409 (-)
AMCG00007051 NA coding upstream 28423 1755590 ~ 1756342 (-)
AMCG00007054 NA coding upstream 32327 1759494 ~ 1794639 (-)
AMCG00007053 NA coding upstream 94784 1821951 ~ 1824537 (-)
AMCG00007052 syt9,LOC106573278,LOC106561481 coding upstream 117488 1844655 ~ 1862173 (-)
AMCG00007060 NA coding upstream 188135 1915302 ~ 1924883 (-)
G20726 NA non-coding downstream 341446 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 730557 990555 ~ 991999 (-)
G20614 NA non-coding downstream 786054 906596 ~ 936502 (-)
G20617 NA non-coding downstream 802449 914130 ~ 920107 (-)
G20612 NA non-coding downstream 818821 902919 ~ 903735 (-)
G20870 NA non-coding upstream 444737 2171904 ~ 2172483 (-)
G20908 NA non-coding upstream 472886 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 559657 2286824 ~ 2288618 (-)
G20947 NA non-coding upstream 699992 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 820837 2548004 ~ 2548289 (-)
G20630 NA other downstream 769494 952236 ~ 953062 (-)
G20609 NA other downstream 804727 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1308430 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1360262 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1462320 259583 ~ 260236 (-)
AMCG00007059 NA other upstream 415508 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 917738 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1748901 3476068 ~ 3500670 (-)
G21426 NA other upstream 3314492 5041659 ~ 5049520 (-)
G21429 NA other upstream 3329620 5056787 ~ 5057406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G198925 NA non-coding NC_048566.1 CM023220.2 87311860 ~ 87312168 (-)