G21367 (dhcr7)


Basic Information

Item Value
gene id G21367
gene name dhcr7
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4681049 ~ 4710926 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU26693
GTGAATTAACGCCCAACAGTCTTTAATACAATCTTTTTCAGTTCAAGACAAATACAGTTTGTGTTTCGCTCCcttttctggaaaatatttaaaaatcagacGTAACTCAAGACCTTAGTTCTCCTGGTCTTAACAGTGATTTAAGTATGTTTCAAAGTAAATTGGAATTGTTTCCAGTAGTAAAATAGATTacttagcattttaaaaatctcgttctgtgtttgttttcacgAATGGCTCCGTGCAGGAAAATCCCAGTAAGGCGTCGATGCAGCCGACAGCCCTCCTATGTGGCCGCCTTGTTTCCCGGCCTATGCCAGATTGGCAGCATTGCTCAGCACCCCACCACACCGGCACATGGAGAGTTAGTTGCTTCTGCACTATTTCTGCCATTTTATTAGAACATTTGTAGATCCAGATAATTTTAGAACGGTTACCTAGCATTTGAAAACCCAtaaaatgctacattttttataaaaaccaCGTCCTCCTTTATATGCCGGTGCATGTAATTCTGCTACGTATGAAGTATGTTTTCAGCTCACCAGTAAGGGAACCTAAAAGATGTTACCAGTTTAATCTCTGAAGCAGGCATGTCTATCCATTGAGATGAAGCCAACGGAATCAGAAATCCGTCATAGTCCGCTAGTACGTGCTTAACCATTTTTCTCTTTGACAAAGAAGTGTTGTGTTTCTGCTGGAGTTCCTCACCTCACCAATCAAAACTTGAAATGTTATCTATGACAGGGAACCTTTACAGTGATCTNNNNNNcccccccccccccaacctaCATTCCCAAAAACTCCTCCCACagcaaaagcacagaaaaaatacatagatatgTACGTTTTGGTAGaatttccacacaaaaaaaaaatattcgaCGTATAAAAGTTTTGCAACCTAAAAAATGCCAGGCACGAGGCGGTACGGCACGGCATCTGTGTAGCGCTTCCAGTCCTTGCCGTATTTACTGGAGCAGCGGTGCTCGTCGCGAACGCAGCGGTGCACCAGCAGGATAGTCATGTAGATGATGTAAAAGTAGGGCAGCAGGTGACTGAATCCGCAGGCCAGGCAGTAGGACAGCGAGCCCAGCAGGTCGCCGGTGTAGTTGAAATGCCGCGCCACGCCCCAGAAGCCGGAGATCATGAGCTTGCTGCGGTGCTTTGTGCCGTCCACCAAGCTGTAGCTGCACTGGATGTATGCCGGCTCCCTGCCCCAGATCGTGCACTTGCCCTCCGTGCGCCGGAACAGGTCTTTCTGGTGATTGGTCATCCTGAAGATGTAATAGGCCACCAGACCTAAGAGCAGGACTCCCACAGCGTTGGCAGTGGAGAGCTGGACTGGATGATAGACCAGGTACAGACCCTGAGGACAAAACAAGAGGAGA
>TU26694
ttttcttttcTGAATTAACGCCCAACAGTCTTTAATACAATCTTTTTCAGTTCAAGACAAATACAGTTTGTGTTTCGCTCCcttttctggaaaatatttaaaaatcagacGTAACTCAAGACCTTAGTTCTCCTGGTCTTAACAGTGATTTAAGTATGTTTCAAAGTAAATTGGAATTGTTTCCAGTAGTAAAATAGATTacttagcattttaaaaatctcgttctgtgtttgttttcacgAATGGCTCCGTGCAGGAAAATCCCAGTAAGGCGTCGATGCAGCCGACAGCCCTCCTATGTGGCCGCCTTGTTTCCCGGCCTATGCCAGATTGGCAGCATTGCTCAGCACCCCACCACACCGGCACATGGAGAGTTAGTTGCTTCTGCACTATTTCTGCCATTTTATTAGAACATTTGTAGATCCAGATAATTTTAGAACGGTTACCTAGCATTTGAAAACCCAtaaaatgctacattttttataaaaaccaCGTCCTCCTTTATATGCCGGTGCATGTAATTCTGCTACGTATGAAGTATGTTTTCAGCTCACCAGTAAGGGAACCTAAAAGATGTTACCAGTTTAATCTCTGAAGCAGGCATGTCTATCCATTGAGATGAAGCCAACGGAATCAGAAATCCGTCATAGTCCGCTAGTACGTGCTTAACCATTTTTCTCTTTGACAAAGAAGTGTTGTGTTTCTGCTGGAGTTCCTCACCTCACCAATCAAAACTTGAAATGTTATCTATGACAGGGAACCTTTACAGTGATCTNNNNNNcccccccccccccaacctaCATTCCCAAAAACTCCTCCCACagcaaaagcacagaaaaaatacatagatatgTACGTTTTGGTAGaatttccacacaaaaaaaaaatattcgaCGTATAAAAGTTTTGCAACCTAAAAAATGCCAGGCACGAGGCGGTACGGCACGGCATCTGTGTAGCGCTTCCAGTCCTTGCCGTATTTACTGGAGCAGCGGTGCTCGTCGCGAACGCAGCGGTGCACCAGCAGGATAGTCATGTAGATGATGTAAAAGTAGGGCAGCAGGTGACTGAATCCGCAGGCCAGGCAGTAGGACAGCGAGCCCAGCAGGTCGCCGGTGTAGTTGAAATGCCGCGCCACGCCCCAGAAGCCGGAGATCATGAGCTTGCTGCGGTGCTTTGTGCCGTCCACCAAGCTGTAGCTGCACTGGATGTATGCCGGCTCCCTGCCCCAGATCGTGCACTTGCCCTCCGTGCGCCGGAACAGGTCTTTCTGGTGATTGGTCATCCTGAAGATGTAATAGGCCACCAGACCTAAGAGCAGGACTCCCACAGCGTTGGCAGTGGAGAGCTGGACTGGATGATAGACCAGGTACAGACCCTGAGGACAAAACAAGAGGAGA

Function

symbol description
dhcr7 Enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor. Predicted to be involved in brassinosteroid biosynthetic process and cholesterol biosynthetic process. Predicted to act upstream of or within cholesterol metabolic process and steroid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in alar plate midbrain region; digestive system; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in Smith-Lemli-Opitz syndrome. Orthologous to human DHCR7 (7-dehydrocholesterol reductase).

NR:

description
7-dehydrocholesterol reductase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26693 False 1391 lncRNA 0.46 2 4681049 4682462
TU26694 True 1400 lncRNA 0.46 3 4681049 4710926

Neighbor

gene id symbol gene type direction distance location
AMCG00007123 LOC101072525 coding downstream 9218 4661836 ~ 4671831 (-)
AMCG00007121 NA coding downstream 22881 4642250 ~ 4658168 (-)
AMCG00007119 LOC103379080 coding downstream 200644 4467672 ~ 4480405 (-)
AMCG00007114 NA coding downstream 325995 4352056 ~ 4355054 (-)
AMCG00007113 ano1,LOC108412580 coding downstream 357949 4285447 ~ 4323100 (-)
AMCG00007130 NA coding upstream 173658 4884584 ~ 4893296 (-)
AMCG00007132 pacsin3,LOC106587102 coding upstream 184716 4895642 ~ 4918493 (-)
AMCG00007133 NA coding upstream 207611 4918537 ~ 4920610 (-)
AMCG00007131 NA coding upstream 214203 4925129 ~ 4931622 (-)
AMCG00007129 NA coding upstream 237579 4948505 ~ 4958670 (-)
G21286 NA non-coding downstream 307924 4357713 ~ 4373125 (-)
G21249 NA non-coding downstream 401480 4279316 ~ 4279569 (-)
G21122 NA non-coding downstream 1178204 3501883 ~ 3502845 (-)
G21082 NA non-coding downstream 1272341 3408154 ~ 3408708 (-)
G21036 NA non-coding downstream 1670794 3006398 ~ 3010255 (-)
G21414 NA non-coding upstream 231145 4942071 ~ 4945720 (-)
G21418 NA non-coding upstream 248590 4959516 ~ 4959753 (-)
G21419 NA non-coding upstream 252431 4963357 ~ 4963560 (-)
G21423 NA non-coding upstream 316276 5027202 ~ 5027726 (-)
G21462 NA non-coding upstream 421402 5132328 ~ 5132542 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 1180379 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2017400 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 2484194 2142675 ~ 2196855 (-)
G20630 NA other downstream 3727987 952236 ~ 953062 (-)
G20609 NA other downstream 3763220 845929 ~ 917829 (-)
G21426 NA other upstream 330733 5041659 ~ 5049520 (-)
G21429 NA other upstream 345861 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 1105883 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 1296714 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 2613498 7324424 ~ 7342341 (-)

Expression


Co-expression Network