G21632 (psmc3,prs6a,LOC107758446)


Basic Information

Item Value
gene id G21632
gene name psmc3,prs6a,LOC107758446
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5816809 ~ 5820284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU27087
CTACCTTAGTCTGGGCAGCACAGGCTCTGGCCAGCAGCGTCTTGCCCGTCCCTGGTGGGCCGTACATCAGGACCCCCTTGGGCGGCTGGATCCCCAGGTTCTCAAACTTCTCCTTGTGGTTCATGGGCAACACAATGGCTTCCACCAGCTGCAAAGACAGGAGGAATGAAATCAGAGGTTCTCACTGCTTTTAAAGATCATTCAGCACAGGAAACACACCTTATATCCCATATCAACAACACTGTCTGGTCATCTCTTTGATCAGGACCACaacaaaactttgacacacccaCTAAATTACAAAGTACAGCCCTGTCATCTAACAGTGACTTCTTGCACTTATTCAAAGTGTTACTCCTGACCTCCTGGATCTGCTTGTCCAGACCCCCGATGTCACTGTACTGCTCGGTGGGGCGCTCATCCACCTCCATGGCCTTCACCCGGGAATCGTACTCCGTGGGCAGAGTCTCCAGGATGAGGTACGAGTCCTTGTTCACCCCCTGGGAGGACGACAACAACACAGCTGGCACCTCACAACAGCAGAGTCCTCGatacaaccacaacaaaaagagcagcacagagcacagccgAGGAGCACAATATCTTAAAAAGCATCTCGGTGGAGGCTCGAAATGCGCCCTGCTGAACAGACTGCTAATTAACCGCCGTTGTTACAATCTGCCGAGTAAGGCGCCGCGACGATGGAAGCAGGAAAGAATAAAAGCATCTGACACACAAGATTGAAACAGATCCATGCGCACTCACCACGAGGTCTCCTGGTTTCAGCTTCTCGGCATCGACCAATCCGATGACAGGGAGGAAGTATGTCTGCCGTGTGGATGTTTTAATCACGGCACATTTGCCTTTCCTCTGGGAGTCCAGATCAATGTTGGCTCCGTCTTCTTCCTGATCATTTGGGTCCACGTCCAGCAGCTCAATGACGTTGGAGACGAGGTACGGCAGGGTCTTGTTCACTTTGATCTTCTCCGTGTTCTCTTTGATCTTATCCTTCATAGCCTGGAGTTCGTGGGTGACCCTCAAGACCTCACTTTTCATGATCTTAATCTCACTGTCCAAGAGGCGCGTCCTCTGGATAATCTCCTCGGTGGACATCTTGAGCACTTCCTCCCCGATCCCATCCTCCACCTCGTCCC

Function

symbol description
psmc3 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Involved in lens development in camera-type eye and semicircular canal fusion. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is expressed in inner ear. Used to study cataract and sensorineural hearing loss. Orthologous to human PSMC3 (proteasome 26S subunit, ATPase 3).

NR:

description
PREDICTED: 26S protease regulatory subunit 6A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27087 True 1154 TUCP 0.52 5 5816809 5820284

Neighbor

gene id symbol gene type direction distance location
AMCG00007163 NA coding downstream 63838 5734674 ~ 5752971 (-)
AMCG00007162 NA coding downstream 123504 5692142 ~ 5693305 (-)
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding downstream 139240 5674177 ~ 5677569 (-)
AMCG00007158 celf1,LOC106561939 coding downstream 188437 5613748 ~ 5628372 (-)
AMCG00007156 rapsn coding downstream 210941 5592874 ~ 5605868 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding upstream 6341 5826625 ~ 5841867 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding upstream 38567 5858851 ~ 5859267 (-)
AMCG00007170 NA coding upstream 52492 5872776 ~ 5896585 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding upstream 261251 6081535 ~ 6088041 (-)
AMCG00007176 NA coding upstream 301418 6121702 ~ 6122376 (-)
G21582 NA non-coding downstream 95267 5721263 ~ 5721542 (-)
G21550 NA non-coding downstream 254601 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 293132 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 298058 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 300838 5514986 ~ 5515971 (-)
G21646 NA non-coding upstream 94788 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 520495 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 698839 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 745933 6566217 ~ 6569739 (-)
G21786 NA non-coding upstream 815299 6635583 ~ 6638309 (-)
G21429 NA other downstream 759403 5056787 ~ 5057406 (-)
G21426 NA other downstream 767289 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2316139 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 3153160 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3619954 2142675 ~ 2196855 (-)
AMCG00007173 madd other upstream 187356 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1504140 7324424 ~ 7342341 (-)
G21942 NA other upstream 1679163 7499447 ~ 7506875 (-)
G22200 NA other upstream 2572912 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 3637204 9457488 ~ 9463337 (-)

Expression


Co-expression Network