G21646


Basic Information

Item Value
gene id G21646
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5915072 ~ 5988322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU27114
CAGGGACTCACCCACGATCTGAATGTTAATGGCTGCCTTGTCCTCCATGTTCTCGATCTGCACCTGCACCTCGTACTTCCCGGAGTCTTTGCGCTCGGCGCGACGGATGAAGAAGATGGTGTCGGTGTCGCTGTTCCTCACGCTCACCTGCTTGGGGTCCAGAGGCTCGCCGTCTTTCGTCCAGGTGACTTTGGGTCTTGGTTTGCCCTGCCCTGGAGAGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU27114 True 221 lncRNA 0.59 2 5915072 5988322

Neighbor

gene id symbol gene type direction distance location
AMCG00007170 NA coding downstream 18487 5872776 ~ 5896585 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding downstream 55805 5858851 ~ 5859267 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding downstream 73205 5826625 ~ 5841867 (-)
AMCG00007163 NA coding downstream 162101 5734674 ~ 5752971 (-)
AMCG00007162 NA coding downstream 221767 5692142 ~ 5693305 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding upstream 93213 6081535 ~ 6088041 (-)
AMCG00007176 NA coding upstream 133380 6121702 ~ 6122376 (-)
AMCG00007177 NA coding upstream 368688 6357010 ~ 6372398 (-)
AMCG00007185 bbox1,LOC106587091,LOC106561934,LOC107682871 coding upstream 667091 6655413 ~ 6660262 (-)
AMCG00007184 NA coding upstream 687344 6675666 ~ 6676981 (-)
G21582 NA non-coding downstream 193530 5721263 ~ 5721542 (-)
G21550 NA non-coding downstream 352864 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 391395 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 396321 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 399101 5514986 ~ 5515971 (-)
G21722 NA non-coding upstream 352457 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 530801 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 577895 6566217 ~ 6569739 (-)
G21786 NA non-coding upstream 647261 6635583 ~ 6638309 (-)
G21787 NA non-coding upstream 650675 6638997 ~ 6644878 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 94788 5816809 ~ 5820284 (-)
G21429 NA other downstream 857666 5056787 ~ 5057406 (-)
G21426 NA other downstream 865552 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2414402 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 3251423 2644905 ~ 2663649 (-)
AMCG00007173 madd other upstream 19318 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1336102 7324424 ~ 7342341 (-)
G21942 NA other upstream 1511125 7499447 ~ 7506875 (-)
G22200 NA other upstream 2404874 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 3469166 9457488 ~ 9463337 (-)

Expression


Co-expression Network