XLOC_006017 (eef1a1a)


Basic Information

Item Value
gene id XLOC_006017
gene name eef1a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27314795 ~ 27325885 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011875
ATCAGACGCGCCGCTCTGTCTCTTCAGCACCGCTCCGGTATCCGAGAACACGCACAGCTTTACAGTTACATTGGCACTTTAAATAAAGCAATCAACCATGGGAAAGGAGAAGCTCCACATCAATATTGTGGTTATTGGCCATGTGGATTCTGGAAAGTCCACTACGACTGGTCACCTCATCTACAAATGCGGTGGGATTGACAAAAGGACCATTGAGAAGTTTGAGAAAGAAGCTGCAGAGATGGGAAAGGGTTCCTTTAAGTATGCCTGGGTTCTGGACAAGCttaaagcagagagagagaggggaatcACAATTGACATCTCCTTGTGGAAGTTTGAGACCAGCAAATACTACGTCACCATCATTGATGCTCCAGGACACAGAGACTTCATCAAAAACATGATCACTGGAACCTCACAGGCGGATTGTGCTGTGCTGATTGTGGCGGCTGGTGTTGGGGAGTTTGAGGCTGGCATCTCGAAGAACGGCCAGACCAGAGAACACGCTCTTCTGGCTTACACACTGGGTGTGAAGCAGCTCATTGTGGGTGTCAACAAGATGGATTCCACTGAACCCAGTTACAGCCAGAAGCGTTATGAGGAAATTGTGAAGGAAGTCAGCACATACATCAAGAAGATTGGCTACAATCCTGACACTGTGGCATTTGTGCCCATCTCTGGGTGGAATGGAGACAACATGCTTGAGGCCAGTCCCAATATGAGTTGGTTCAAAGGTTGGAAGATAACCCGCAAGGAAGGTAACGCAGCCGGGACCACCCTATTGGAGGCTTTGGATGCCATTCAGCCTCCAACTCGTCCAACTGACAAACCTCTTCGCCTGCCTCTTCAGGACGTTTACAAGATTGGAGGCATCGGAACCGTTCCTGTGGGCCGTGTGGAGACTGGCCTTTTGAAGCCAGGTATGGTGGTCACCTTTGCACCAGTCAATGTGACAACTGAAGTCAAGTCTGTAGAGATGCATCATGAGGCTCTTTCTGAGGCGCTGCCCGGGGACAATGTTGGCTTCAATGTTAAGAATGTGTCCGTCAAGGACATCCGTCGTGGCAACGTTGCTGGGGACAGCAAAAATGACCCGCCGCAAGAAGCTGCCAATTTCACTGCTCAAGTGATCATCTTGAACCACCCAGGGCAGATCAGTGCTGGTTATGCCCCTGTGCTGGATTGCCACACTGCCCATATTGCCTGCAAATTCGCAGAGCTGAAAGAAAAGATCGACCGTCGTTCTGGAAAGAAGCTTGAAGACAACCCCAAGAGCTTGAAGTCTGGAGACGCGGCCATTGTGGAAATGATCCCTGGAAAGCCCATGTGTGTGGAAAGCTTCTCCGAGTATCCTCCTCTGGGTCGTTTTGCTGTGCGTGACATGCGTCAGACGGTTGCGGTGGGAGTGATTAAAGGAGTGGAGAAGAAGACCGCGACAAGCGGAAAGGTTACCAAATCTGCCCAGAAAGCCCAGAAGGCCAAATGAATGTTGTGTTTGACTGCCAACTCCAGAGACACATATGGAAAAGCAGAGGTCATTCAGCTCTTCAATCCTATTGGCTGTTTAGGTTCCATAGTCAGAGACTGCTTAATAGTTCCAATGCATCGCAAAAGtatcagaaggaaaaaaaatcaatatcaaAAGCAGTCCTTTAGATAACTCTAATTTGTATGTAAACTCATAAGTCTTCAATCCATGCATTGTTCAATAGTGTTTTAATAGTTGTGCTCTTCTTCGACGATGGCTGTCCAAACCAtatgtgatttttaaaatcttgagAGGTCTGACCTCTCCTTCTCTGGAGTGCAGTTTTAGCCTGGTTCTCACAATGTTGTCTTCGCTTGTTTTAGTGCTTGTTTGCAGAAAACCATGTGTTCAGTATCCACTGGTGGTGAGCTACTTAAAACAACACTATTTAGTAGACTTTGAGAACCTGTATGTTTAGCTTTGCAGaacaaagaaaatgtaaaaaaaaaaaaattaagctctTTATGGGCCCATTTCTGGGTTCATGCAATCTTCGGTGCACTGACAGCTTTATGTTTAGCACTTTGACTGGCGTAGGCTAACCCTGCACAAGCACTTGTTGACTTTAATTGGCATTAGCTACTGCACCTTACTCTTAAAACTAAAAGCTTTCATGTCATATTAAAGATGTCTCAACCATAA
>TCONS_00011876
GTATGTCTATAGactattttgaggaatgtaaacaaaaacaatagtcccaatgtatttcctgttttacatgatcaaaatgtggctctttttggactCTCGAAAGCTATAGAAGTTGAAAATGTTATCAtagctgttttaaaattaaagttttgtatttgtttgacaagcaaaaaatattcaTGGGCCCATGACATGACTACATTAAAATGGTCTGTCTTACTGTAGAATATTCACAAGTGACAGATTGTTGGTGTTTGTAAAGCTTTACAGTTACATTGGCACTTTAAATAAAGCAATCAACCATGGGAAAGGAGAAGCTCCACATCAATATTGTGGTTATTGGCCATGTGGATTCTGGAAAGTCCACTACGACTGGTCACCTCATCTACAAATGCGGTGGGATTGACAAAAGGACCATTGAGAAGTTTGAGAAAGAAGCTGCAGAGATGGGAAAGGGTTCCTTTAAGTATGCCTGGGTTCTGGACAAGCttaaagcagagagagagaggggaatcACAATTGACATCTCCTTGTGGAAGTTTGAGACCAGCAAATACTACGTCACCATCATTGATGCTCCAGGACACAGAGACTTCATCAAAAACATGATCACTGGAACCTCACAGGCGGATTGTGCTGTGCTGATTGTGGCGGCTGGTGTTGGGGAGTTTGAGGCTGGCATCTCGAAGAACGGCCAGACCAGAGAACACGCTCTTCTGGCTTACACACTGGGTGTGAAGCAGCTCATTGTGGGTGTCAACAAGATGGATTCCACTGAACCCAGTTACAGCCAGAAGCGTTATGAGGAAATTGTGAAGGAAGTCAGCACATACATCAAGAAGATTGGCTACAATCCTGACACTGTGGCATTTGTGCCCATCTCTGGGTGGAATGGAGACAACATGCTTGAGGCCAGTCCCAAT
>TCONS_00011877
ATGGGAAAGGAGAAGCTCCACATCAATATTGTGGTTATTGGCCATGTGGATTCTGGAAAGTCCACTACGACTGGTCACCTCATCTACAAATGCGGTGGGATTGACAAAAGGACCATTGAGAAGTTTGAGAAAGAAGCTGCAGAGATGGGAAAGGGTTCCTTTAAGTATGCCTGGGTTCTGGACAAGCttaaagcagagagagagaggggaatcACAATTGACATCTCCTTGTGGAAGTTTGAGACCAGCAAATACTACGTCACCATCATTGATGCTCCAGGACACAGAGACTTCATCAAAAACATGATCACTGGAACCTCACAGGCGGATTGTGCTGTGCTGATTGTGGCGGCTGGTGTTGGGGAGTTTGAGGCTGGCATCTCGAAGAACGGCCAGACCAGAGAACACGCTCTTCTGGCTTACACACTGGGTGTGAAGCAGCTCATTGTGGGTGTCAACAAGATGGATTCCACTGAACCCAGTTACAGCCAGAAGCGTTATGAGGAAATTGTGAAGGAAGTCAGCACATACATCAAGAAGATTGGCTACAATCCTGACACTGTGGCATTTGTGCCCATCTCTGGGTGGAATGGAGACAACATGCTTGAGGCCAGTCCCAATATGAGTTGGTTCAAAGGTTGGAAGATAACCCGCAAGGAAGGTAACGCAGCCGGGACCACCCTATTGGAGGCTTTGGATGCCATTCAGCCTCCAACTCGTCCAACTGACAAACCTCTTCGCCTGCCTCTTCAGGACGTTTACAAGATTGGAGGCATCGGAACCGTTCCTGTGGGCCGTGTGGAGACTGGCCTTTTGAAGCCAGGTATGGTGGTCACCTTTGCACCAGTCAATGTGACAACTGAAGTCAAGTCTGTAGAGATGCATCATGAGGCTCTTTCTGAGGCGCTGCCCGGGGACAATGTTGGCTTCAATGTTAAGAATGTGTCCGTCAAGGACATCCGTCGTGGCAACGTTGCTGGGGACAGCAAAAATGACCCGCCGCAAGAAGCTGCCAATTTCACTGCTCAAGTGATCATCTTGAACCACCCAGGGCAGATCAGTGCTGGTTATGCCCCTGTGCTGGATTGCCACACTGCCCATATTGCCTGCAAATTCGCAGAGCTGAAAGAAAAGATCGACCGTCGTTCTGGAAAGAAGCTTGAAGACAACCCCAAGAGCTTGAAGTCTGGAGACGCGGCCATTGTGGAAATGATCCCTGGAAAGCCCATGTGTGTGGAAAGCTTCTCCGAGTATCCTCCTCTGGGTCGTTTTGCTGTGCGTGACATGCGTCAGACGGTTGCGGTGGGAGTGATTAAAGGAGTGGAGAAGAAGACCGCGACAAGCGGAAAGGTTACCAAATCTGCCCAGAAAGCCCAGAAGGCCAAATGAATGTTGTGTTTGACTGCCAACTCCAGAGACACATATGGAAAAGCAGAGGTCATTCAGCTCTTCAATCCTATTGGCTGTTTAGGTTCCATAGTCAGAGACTGCTTAATAGTTCCAATGCATCGCAAAAGtatcagaaggaaaaaaaatcaatatcaaAAGCAGTCCTTTAGATAACTCTAATTTGTATGTAAACTCATAAGTCTTCAATCCATGCATTGTTCAATAGTGTTTTAATAGTTGTGCTCTTCTTCGACGATGGCTGTCCAAACCAtatgtgatttttaaaatcttgagAGGTCTGACCTCTCCTTCTCTGGAGTGCAGTTTTAGCCTGGTTCTCACAATGTTGTCTTCGCTTGTTTTAGTGCTTGTTTGCAGAAAACCATGTGTTCAGTATCCACTGGTGGTGAGCTACTTAAAACAACACTATTTAGTAGACTTTGAGAACCTGTATGTTTAGCTTTGCAGaacaaagaaaatgtaaaaaaaaaaaaattaagctctTTATGGGCCCATTTCTGGGTTCATGCAATCTTCGGTGCACTGACAGCTTTATGTTTAGCACTTTGACTGGCGTAGGCTAACCCTGCACAAGCACTTGTTGACTTTAATTGGCATTAGCTACTGCACCTTACTCTTAAAACTAAAAGCTTTCATGTCATATTAAAGATGTCTCAACCATAATcatgttgtttgtgtttatttcacttttgaaTATGATAATGCGTAAAGATATGTACTGTATGACCACATTCAAAATTCATACAAATACTGAATGTTTTTTTCCAAAAGTTTAAGTATTTGGATTTTAAGAAGCCAATGTGTAGCCTACTTAAAACACTTTAGAGGATTAGTTTAGccaaaactgaatattctgttATTCACACTCATATTGTTCCAAACCCTGAGATATTCATTAaagatattttagaaaaaaagctCCCTCATCTTCTATAGACCGCAGCGGTCCAGAGATTAGAAAATTACAGAAAAGTAAcccaaaacattgtcaaaatattCCAAATTGTCatgcaaatctaaaaaaaatcacttaacaGCAAACAAAAACTTTGCTTACCCATGGCACATTTACTATTGCCAatatgacatgagggtgagttgTGGATACTCATCCCGAAGCCCCTAGAGACTACGCAGCGCCATTGATGCGATACAAGACCAGTGAAGAGATGATGCAAAGGTATCTATAATccaggaccaggccgtatcctgagctgatgctgtggtggtcatggatgaatggagtgcatgagactgattcctgaaagaccacgaTGACAAACAAGTCCCCGCATTGATTCTGTTGGCCAGCCTGATTAcccacacctgcagttctccatgatggacatccagcttctccagcctccagtgcctagactgcagctcctcACTGTAAGTTTGGCTAGGAGaataatggtcgtgcccaacagagcctggtttctcttaagttttttttttccccttcactttgtcaacttgtaaagtttttttcctcgccacaTTAGCCACTGGCTTGCTCAGACtgggacttgtgaagctgtgcattgatggatctcatcttcagtgtttggactctcagcagtgaaatgtAAATgagactgaactgaacttcaactctgaaatctggactttactagaactatgttaagccgctgacacaatctacattgtaaagagcgctatagaaataaacaaacatgaacaTGAGTTATTAACCTAACATTTGTGTGAAATAATCCATTAAAAATCATGTACAATTGCAGAATATTGTGTTTAGATTCTATATAAAGTTCCTAAAAAG
>TCONS_00011878
GGACAATGTTGGCTTCAATGTTAAGAATGTGTCCGTCAAGGACATCCGTCGTGGCAACGTTGCTGGGGACAGCAAAAATGACCCGCCGCAAGAAGCTGCCAATTTCACTGCTCAAGTAAGCTTGACTCACTTCTGTACTCACTGCTTCTGCTATCCTAAGAAGTTATTACACACTTCATTGTGTCCCATCAGGTGATCATCTTGAACCACCCAGGGCAGATCAGTGCTGGTTATGCCCCTGTGCTGGATTGCCACACTGCCCATATTGCCTGCAAATTCGCAGAGCTGAAAGAAAAGATCGACCGTCGTTCTGGAAAGAAGCTTGAAGACAACCCCAAGAGCTTGAAGTCTGGAGACGCGGCCATTGTGGAAATGATCCCTGGAAAGCCCATGTGTGTGGAAAGCTTCTCCGAGTATCCTCCTCTGGGTCGTTTTGCTGTGCGTGACATGCGTCAGACGGTTGCGGTGGGAGTGATTAAAGGAGTGGAGAA

Function

symbol description
eef1a1a Predicted to enable GTPase activity and translation elongation factor activity. Acts upstream of or within heart development. Is expressed in asteriscus; brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8278 Predicted to enable GTPase activity and translation elongation factor activity. Acts upstream of or within heart development. Is expressed in asteriscus; brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).

Ensembl:

ensembl_id ENSDARG00000039502

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011875 False 2170 mRNA 0.46 8 27314795 27324747
TCONS_00011876 False 923 mRNA 0.43 3 27316632 27317730
TCONS_00011877 False 3211 mRNA 0.43 7 27316934 27325885
TCONS_00011878 True 491 lncRNA 0.50 2 27320912 27324002

Neighbor

gene id symbol gene type direction distance location
XLOC_006016 slc17a5 coding upstream 1239 27298673 ~ 27313556 (+)
XLOC_006015 rin2 coding upstream 17846 27232694 ~ 27296949 (+)
XLOC_006014 BX323884.1 coding upstream 82222 27216641 ~ 27232573 (+)
XLOC_006013 slc24a3 coding upstream 104794 27073901 ~ 27210001 (+)
XLOC_006012 soul2 coding upstream 271461 27040887 ~ 27043334 (+)
XLOC_006018 cgas coding downstream 2213 27328098 ~ 27332360 (+)
XLOC_006019 CR354610.2 coding downstream 38064 27363949 ~ 27391937 (+)
XLOC_006020 asrgl1 coding downstream 443013 27768898 ~ 27782764 (+)
XLOC_006021 NA coding downstream 459209 27785094 ~ 27805880 (+)
XLOC_006022 dre-mir-30e-2 coding downstream 469245 27795130 ~ 27795209 (+)
XLOC_006011 NA non-coding upstream 505476 26802494 ~ 26809319 (+)
XLOC_006009 NA non-coding upstream 1249531 26056457 ~ 26065264 (+)
XLOC_006008 NA non-coding upstream 1331430 25965727 ~ 25983365 (+)
XLOC_006007 NA non-coding upstream 1353426 25944279 ~ 25961369 (+)
XLOC_006024 NA non-coding downstream 938351 28264236 ~ 28282323 (+)
XLOC_006025 CR762431.1 non-coding downstream 1081028 28406913 ~ 28414559 (+)

Expression


Co-expression Network