G22217


Basic Information

Item Value
gene id G22217
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8439852 ~ 8443144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU27848
ttttagaacacccccattcttccagttgttattgaaatttaagcagttcaagtccagtgaatagcctgcaatggtacaaaggtaagcggtaaaatGCCAGAGGTTTAATAAAAAATCCTcagtctcattcagacggtcacagatcgcTCTGTTtcaatcggatttctttgcaaataggcttgttttgttcagaatgattaatccagtatatattatttgatgtcctatcaaacacagagaagttcagatccaattatgtaaaatcgttgtgtattagtacactgtaaacagagttttccatcttgacattttgagctctctacgtgCGTGTGTTGCaactaccaaaacgtggatggtcttgtattgatcagtagactgtctggtttcTGAGATTGTGTATTCCacctcagaccaagtatcccccatCTCCCCATTTGCGGGGGTGGTAGTGGGGGCATAAATGCGGGGAATGCTTCaaatcgttagaaagctgagtcccgctttcatgggataccaaacacttggcaaacaacacaacagtgaggagtacacatgggattaaagagaagcacacggatttggtgcccttttaaggggtTCTTCATCTTAacgggttacattttgttaaaccaaaagattccatgatttattttttatctccaattgtttatttgatctatgctttaatttcagagcacattgagacattaatctgcttaaatttcaataaaaactggtcTCTGTGGGGGTGTTGCAGGAACAGGCAGGCCAGTGGGAAATCTTCATTCAGCTCTCCAGTATTACCCAAGGCTCTTCGCAGTGCATGTGCAGTCGATGCTATGGGTTATTTGTTATTCCTGTAGAAGCCTGAAACTCATAGCAGGCCagcagattaaatgtatttaatgaaatgtgtgACAACGCTGAAACAGTAACAGCGCTGCTCTAGAGCCCCAGCAGGGCAGTCCTTCCCATAAACCCACACCAGCTGTCACTGTGAAACTACAAGGAGGACAATCGCATTGAAAGTCATTTGAAGCACCTCTAAACGCAGCACATGGAAACCCCTACACAGACCTatcaaagcaaaaaataaatatccatgtAGTTTTAGCTTGATAAGATGGTTAGCACATGAAGATGAAAAGTTTCCCTTTCAGCCAGTACCTCCCCTGTCCACCTCAGCAAAGACAAACATTACGTTCAGCATCAGAGGGGTGTTCTGCCAGTCCAAAAACACCCAATTTGGATTGAAAAATATGAACCCGCAGGGAATAAAAGTACAAACTAATGAAAACGTTATACTTATTCAttccaaattcatattttacatacaaaaacaatatttccaGCAAATTGTCTGTAAAATGTCTTCTACCTTTGTCTCTTTTGCCCCCTGCATGTTTATGGACAATTCCATGAACACAGTATAACAGTCAGACTGTACAGGGAGACAGCAGGCCAGATGGGAttagaattttaaaatatttttaaagatctatttattccaatatttatatatttatgtattttcgcAGTATCTGTGATGTTTTTAACATATTCTTTGACAGAAACAGATTGAACAGCTATCTAATACCATAGAGGGTAGGTAGGTTTGCTTTATCTGAGCATCAGTGTTATTCCAAGTGAGGGCGGTCTTATCTGCAGAGATATAAACTGGGTGTTATAATTAACCACAATCTAATGCTAAACTGCCTAAATCATCATTTTTAGAAGAGTACACATGTTGGTCAGAATGTACAGGGTGGATCACCTTGCCTTGCTTTTAAGGTGTATGTTAAATAGCTGTAAATATGGTGCCTTTGGAGACATCCAACATTATGCTTTTATCCTATAGGTCTCAGTGCTAAAGTGACATCAAGAGACATACTGTTATGACCACTAACCACTATTTCACTGTTGTCTGCACTCGCACAAACTTGGTCGGAGCTTGCTGTACTTGCTGGACTTTCTGTATGTTTATAAAACTGTTGCTTTgatactgcagtgtgtgttgcaATGACtggatgtgtttaaaatgtcctctcctgtctctctttAATATCAGAGAAGTCACAGAAATTGAGAGAGAAGTTCAATCTTTAATTTGGTCCTAGATGTCATTCAGTTTCCCACTCAATAACCTTATGGGATATGAGGCCTCTAAATAAACTTTGTTGTGAGTTTCGAACTATAATAGTTGTCGATGACAGGTTTAACAGAGTAATACAGAGACTTCCCTGTtctgatttacagtataaaacATGCCCCCTTCTTATTAATTTTCGTCCTGATAAACCTTATTAGTCTTCTTCCAGTTATTTTCTGATTTTGGCTCTGAAGTGAGAAAGCACATTCTTTTAAAACTCTGATAGACCATAAGTATGATCATACACAAATTATCTGTAACTTCCCTGCCAAACAAGGTCTCTGTGCTTAATGTCCCATCTGAAAGcgagtatttttctttttcttatacTTTTACTAGAACTTCATACCACAGTGccaatcattattttatataatacacctttcttttttattgcaatCAGAAGGTAGAATTTTGTTTATTACTCACAAATCCGGCAGATCTTTCCAGATAAGTTAAAAGTCCTGCTTTCAGGTTGACAGCAAGAGACTTTCAAGTTAAGTTCTTCTTAATTAAGTCCAACTTGCACCAACAGTTgaatataagaatataaaatacttaaGTGTAAGttcactgttttatttgtaagcaaaggaagggaaattaaaaaatatattttttaaactatggTACTTAAAAGGTGCTTTAATTAAAGAGTGATTCATTtgcaacaagaaaaacacacacagtgcaaaTTCCTTGCTCTGAACGATTAAtgtgtaaattgtgtttttgacagGCCCCAGCACACTCGCCTAGCCTGAGAAAAGCAAATATGCttaaaaaggcaaaaacaaagCCAAGAACAATCCATTGCAAAGAGGATCGCTGTCGTTGTAAATTATTAGGAATAGTTTTGACCTAACATTTCTTCTGAAAAATGCCTCGAATTAATTCTGCTGTCTTGCACAAAAATGTCTTGTCCTGTATAGTGATCCGATTACtctgtgttttgaaataaatgactggaatcctgtaaaatacaaataaataaaataaacacataaaaactgCTTTTCGTATCAGTAACTTTATATTGAGAAACAAATAAGAGTGCTTTTCAATCTCTGTGTATTAGTATAGTgctatattgtaattattgtacAATGTGTATGCCGTTCTATGTACAGTGGTTGTTTACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27848 True 3293 lncRNA 0.37 1 8439852 8443144

Neighbor

gene id symbol gene type direction distance location
AMCG00007239 rpl27a,LOC107687759 coding downstream 256666 8180558 ~ 8183186 (-)
AMCG00007238 NA coding downstream 334913 8103488 ~ 8104939 (-)
AMCG00007226 ipo7,LOC106587545,LOC106562356 coding downstream 468277 7947714 ~ 7971575 (-)
AMCG00007228 NA coding downstream 492911 7936262 ~ 7946941 (-)
AMCG00007227 wee1,LOC107758614,LOC106587548,LOC107583885,LOC107580369 coding downstream 505553 7928506 ~ 7934299 (-)
AMCG00007240 tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678 coding upstream 183 8443327 ~ 8466794 (-)
AMCG00007246 rras2,LOC106676223 coding upstream 108953 8552097 ~ 8560440 (-)
AMCG00007247 copb1 coding upstream 160334 8603478 ~ 8617299 (-)
AMCG00007248 psma1,LOC107748950,LOC107687760 coding upstream 177394 8620538 ~ 8626345 (-)
AMCG00007249 LOC105889041 coding upstream 252317 8695461 ~ 8698149 (-)
G22193 NA non-coding downstream 185185 8253893 ~ 8254667 (-)
G22191 NA non-coding downstream 187188 8252027 ~ 8252664 (-)
G22111 NA non-coding downstream 455342 7913604 ~ 7984510 (-)
G22077 NA non-coding downstream 538677 7900802 ~ 7901175 (-)
G22057 NA non-coding downstream 686155 7753414 ~ 7753697 (-)
G22249 NA non-coding upstream 247054 8690198 ~ 8690751 (-)
G22298 NA non-coding upstream 532973 8976117 ~ 8980818 (-)
G22305 NA non-coding upstream 737874 9181018 ~ 9184829 (-)
G22393 NA non-coding upstream 974624 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 1155548 9598692 ~ 9599154 (-)
G22200 NA other downstream 43628 8393196 ~ 8396224 (-)
G21942 NA other downstream 932977 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1097511 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 2385788 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2619568 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 1014344 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 1516918 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 1709336 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1744164 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 1821901 10265045 ~ 10272695 (-)

Expression


Co-expression Network