G22373


Basic Information

Item Value
gene id G22373
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9488712 ~ 9492667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28040
CGAATTTTCATATGATAGAAATATCATCAAAGTCCAGAGATTACAAAAACaccttttaatttttgtttacaTCACATGACTACAGCTGTACTGTGTCTACATCAGAATGCCAGCAGTATACTAGGTAGATCAGAATTAGTCTGCATTTATCAGTTATCAatagaaaaaagcaaacatacTGTTGACcacatttttgatttttttaaagggtcACACTTTTGCAGTGTAAAGAAAAACTTGAAGGGGTCACCAGTGCCCTCAATCCAGCTCTCTAATTCACTTTGAGCATACCTTTATGGCGTAACAAATGGAATCAGCAAATTATGCAAGGcagccatttaaaatataataaatagtaCACTGATAGTTTCCACCTTTTTATGACCAGAGCTATGCAATGTTCTTTGTTATCACCATGCCTGAAAccataattacaattatttagaCTGCAATGCTTAGAAAGTGTTGAGTATTGTAACAAAATGTTTCCTTCTTTGTACACCGTTTTAACATCATAATCAAAAGCATCATTTGTTATGTCTAGATCTCGAAGTTAGAGTATCCGGGGTGATGAAAGAAAATTGGGTGATGGATTTGAAACCGGAAAATGGGCTGGAAAGGAAGGTTAAGACAAAATCTGGAGACTACAAATTCAAGCAGAGCTCCACGCTTGAGAGGAAACTCACTGAGAACACGTCTACAGCCAGTACAATCGCATCGCACAGCATTCCCTGTATTTAACAAGTGCTGTAGGTGACGTTTTCAGTGATCCAGTCTGTATTCCTAAGTCTTTCAGTCTTTTTTAGTACACCACACATACAGGGAATAACACCTAAAGACATGAACCCTGAATCTTCCATACACTTGCCATTATCAAATTTAATTACAAGGGCCATTGTCAGCTACAGGGGCCTACAGTGGAACACTTAGgaaaacacactctctcacatacaaaaatagaaatactaaatacattttcaatgatAACATAAGCATGAAAGCTAACTTAAAATTAAACTCTTATATTCCCAAATCAAAAATGATTACACGTCTGGGTTAAACGACTaacaagggaaaaaacaaccaaaacacagATTAGTATAAATGATATGTAAATGATAGTGGCTATGTATGGATGTGTATTTCATAGATGAACAGCCAATGCTTTGTTGTGGATGTGTGCACTGCATTAGCAATCCATAATGTAAACAATACGATAGACCCCTGTGGGCATATGctcatagttttatttattgacgGCTTAGTATGTTCAAATTCATTCAGCGACACTGTTTACAGCGCTTAAATAACTGTTTGCTAGTGATAGCAAGCCTTTAGGAGTGACTTTTTTATCATcaataattgattattttttacaggAGCTCAATGGGGAAGAGAATATATTCCTTCATGATTACATTACCTACCTAGAGTTCTCTGTACAAACAGCTATTTCTGAAGGCAAGCAGATGCAGGTGAGCAGCAGAAACACCTTATTGTACAGAGGCCATCGAGTTGCTTTTTATACAGTAAACTAAATGGGAGATATGAAACACAGGAGGTATATGTCACTTcctaaatacatacagtacacagAGGAGGATGCCAGGTAGGCAAAGTGTTGCTGTCCATCTTATTTTGTACTTAGGTATATTTATTGTGTAACGATGGCTTCATAACATGTCTGATTAATGCCAGTGCGCAACACAGGCCCATGCTTACAGGAGTGTCAAAATACCATCAAATGACTGAaaaaaaaccatacaaaactaaaaactgaagCTGAAAGATGTAGAGGTAACGCTTCCACCCAAGTGTTTTACCCACACTACACTGCCAGTCTCTGTGTGGGCCCGACTTCAGAGTTTTTCAAAACCAGAGCTCAAAGGGGAGCAATAGAGGGGAAGTCAGAGAAACCATCTGCACTACTGGGTCCCCTGAGAGGAAGACCCTTTCGGAGAGTTCACAAACTTAAGGGCTACAAGAGACACGCCCTGGAAGCGAGCGGAGCTCAAGTAGTATTGTCCACGTTGAGAGCGTTTCCCACCTCCATGGAGTACCTTTGATGACACCTACAGCTCTGCTCCGTGTGCTGTAAAATGGAGATACAGAGCAGGAAGCCTGTTCGGCACTGGAAAGTATAAAAGAAGAACAGCATCCTCAATGAATGACTTGTCCTTCCCATACTGAAGTGTTAGTATAGAAAAGGCAGAAGTGGaacaattgtattgtaattccAGTGTCAAATGGCCAACAACCTGTAACTTGGCTTATCGCAGGACATCCAGAAGAACAATCCCAATACTAGGCAAGGCTTTGGCTTCTCTCAAGACACTAACAGCATGGCACAGGGATAAATGAACAAGATCACAGCCAAGACTGAATTGGGTTCACCCCACTGCAACAGGGGCACAATGCAaactataaatacacaaattaattccATCCTTCAGCCATTCCTACCAACCTCATATATAGCAGCCTTCatggacaaaaaaacattaataataatgggtgGACTGTAGCAGGAGATCAGTGGATTTATTTGGGAAAACACTCCGATTAAGAAGGTTGTGCAGTTATAGTGGTATACGGAggcctgttttttatttgtttggtacccccacccccaactcaAGGTGTATAGCTTTCCAGTATATATAGATCATGTGCAGTCTTGCCACAGCTTGCAAAAAGTCCATAACGAACAAAAAACTTGTGGCTGAcctgcagattgtttttttttttttgtagtcttgcattttaacatgcattttctTACACTGTTTATGAACCATGCATCATAGTTGTCCTTTATATGCTTGTCCCATGCTTAGGTATACTCTGCTCTACTCCTTATACAAATTCTTTACATACCAGAAAGTTCAGAATAAAGGGGGGGGAAATGAAAGTCCcaaattgttttctgtaaacgATTTTATCAGCAGTGCTTGCATGACATGGATTCAGAAGCTGGCATTGGATGAGACAGCAAGGTTGACCAAGACAAACAGTCTTCCAGTTTTCACAAGGGGGCAGGATGAAAGGGGTCTACAGTAACCCATAGTCCCTCATAACCATTGTCAAATCGATGGATAAACCCCAACCGTCTACAATTCAACaaaggcacatttttttttttcctggtcaattttttttctgttttgtttttgtgttttgtttaaggcTACAACAGCAaataacagacagacagctttGGATTTGAAAGAGATCTTGTGAGGATGTTGGCTTTACAGACTCTAGCATCCCTCTTTCCTGCTCTGATGTTCTCATTTCCCAGGATAGCTCAGTGTCTGGaaacgtttttttttatatggacAACTCCTGGAGATAAAGTTAGGTCTGTGGTAGTGGCCAAAAGTTCAGGAGGGTTGAAATACAGGGGGTTAATGTGGGGGGACAGTTTATATGATGTTGGATATTGACAGTGAAGTCCAGGTTAGTTAGCCTGTTGGGCAGTCATGTGGGGAATCCCTCGGCCAGGTCTGAATGGTCCTCCACGACCTGCAATCCAAACAGAGAGATGCATCAATCTAGAGCCATCTACACACCATTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28040 True 3580 lncRNA 0.40 2 9488712 9492667

Neighbor

gene id symbol gene type direction distance location
AMCG00007264 NA coding upstream 55397 9430419 ~ 9433315 (+)
AMCG00007263 nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665 coding upstream 78624 9396853 ~ 9410088 (+)
AMCG00007257 NA coding upstream 302864 9178903 ~ 9185848 (+)
AMCG00007254 NA coding upstream 531308 8880884 ~ 8957404 (+)
AMCG00007251 insc coding upstream 703978 8777969 ~ 8784734 (+)
AMCG00007265 lmo2 coding downstream 29767 9522434 ~ 9526650 (+)
AMCG00007270 alx4,LOC107593440,LOC107754690,LOC107683603,LOC107688160,LOC107750553 coding downstream 131834 9624501 ~ 9634126 (+)
AMCG00007276 NA coding downstream 301067 9793734 ~ 9849791 (+)
AMCG00007277 NA coding downstream 429202 9921869 ~ 9925952 (+)
AMCG00007275 myod2,myod1c,LOC105028891 coding downstream 438221 9930888 ~ 9932943 (+)
G22364 NA non-coding upstream 92232 9396221 ~ 9396480 (+)
G22344 NA non-coding upstream 149612 9335718 ~ 9339100 (+)
G22285 NA non-coding upstream 510516 8976101 ~ 8978196 (+)
G22230 NA non-coding upstream 884654 8592139 ~ 8604058 (+)
G22212 NA non-coding upstream 996255 8492161 ~ 8492457 (+)
G22417 NA non-coding downstream 149930 9642597 ~ 9644747 (+)
G22528 NA non-coding downstream 659822 10152489 ~ 10241408 (+)
G22596 NA non-coding downstream 827802 10320469 ~ 10321858 (+)
G22652 NA non-coding downstream 1134007 10626674 ~ 10685068 (+)
G22712 NA non-coding downstream 1618676 11111343 ~ 11111723 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 777401 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 1037130 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 1092470 8367436 ~ 8396242 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 1305291 8147398 ~ 8183421 (+)
G21891 NA other upstream 2109766 7374323 ~ 7378946 (+)
AMCG00007278 NA other downstream 444253 9936920 ~ 9965267 (+)
AMCG00007307 clg19h11orf96 other downstream 1118529 10611196 ~ 10613104 (+)
AMCG00007337 NA other downstream 4986006 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 5784044 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 5873994 15366661 ~ 15379965 (+)

Expression


Co-expression Network