G22414 (LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160)


Basic Information

Item Value
gene id G22414
gene name LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9598692 ~ 9599154 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28101
AGGAGATGAGCGATCCGTTGTGGCCACTTTCTTGGTGGAGTTTGCTTCCTTCTGGGGGAGTTTTGCAAGAGGACCTCTGCATGAAGAGGTGGTATTTGTTAAAGGTGCCTTCCCCAGAAGTGGCATCCAATGACTGGCATTCCTGTTGGAACGGGCTCCGCGACTTTTCCCCATAAGCCTGACCTTTGTTGGTCAGGAAAGTGGGGCTGTATTTGGTGTCACTCGCTTGGAATGTCCTGAAAGGGTTAGCCTGGTGATCCCTACCTTGCGGTGCACTTGGGTTATAATATGAATCCATGGATGTCATATCACAGTATGAAACGCAAGTCTCAGCGTTCATtcctaaaaaaatgtaaaagaaaaagaggtccaaatgtttttttttctttttcctttttggagAGTGAAGCAAACagatactctctctctctttcacacacagacgcacacgcatacactcaca

Function

NR:

description
PREDICTED: homeobox protein aristaless-like 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28101 True 463 lncRNA 0.46 1 9598692 9599154

Neighbor

gene id symbol gene type direction distance location
AMCG00007269 NA coding downstream 87353 9495648 ~ 9511339 (-)
AMCG00007266 nat10 coding downstream 111004 9473893 ~ 9487688 (-)
AMCG00007268 NA coding downstream 171910 9411640 ~ 9426782 (-)
AMCG00007259 NA coding downstream 215005 9350044 ~ 9383687 (-)
AMCG00007262 rps13,LOC107586033 coding downstream 259537 9335727 ~ 9339155 (-)
AMCG00007272 ext2 coding upstream 45281 9644435 ~ 9683079 (-)
AMCG00007271 kcnj11,LOC106561047 coding upstream 86952 9686106 ~ 9687263 (-)
AMCG00007273 abcc8 coding upstream 91119 9690273 ~ 9750042 (-)
AMCG00007274 ush1c,LOC106561052 coding upstream 155770 9754924 ~ 9792167 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding upstream 340037 9939191 ~ 9943224 (-)
G22393 NA non-coding downstream 161423 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 413863 9181018 ~ 9184829 (-)
G22298 NA non-coding downstream 617874 8976117 ~ 8980818 (-)
G22249 NA non-coding downstream 907941 8690198 ~ 8690751 (-)
G22217 NA non-coding downstream 1155548 8439852 ~ 8443144 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding upstream 25412 9624566 ~ 9624878 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding upstream 34655 9633809 ~ 9640829 (-)
G22505 NA non-coding upstream 433974 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 486606 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 774585 10373739 ~ 10375219 (-)
AMCG00007267 NA other downstream 135355 9457488 ~ 9463337 (-)
G22200 NA other downstream 1202468 8393196 ~ 8396224 (-)
G21942 NA other downstream 2091817 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2256351 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3544628 6007640 ~ 6054064 (-)
AMCG00007282 NA other upstream 360908 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 553326 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 588154 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 665891 10265045 ~ 10272695 (-)
G22838 NA other upstream 3752363 13351517 ~ 13352073 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034771 alx4a coding NC_007118.7 CM002891.2 26893688 ~ 26924903 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_02846742_02867620 ALX4A, ALX4B, ALX4 coding CI01000026 null 2846259 ~ 2867620 (-)