G22416 (alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993)


Basic Information

Item Value
gene id G22416
gene name alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9633809 ~ 9640829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28103
CTCACTTCTTCCAAAGCAAATACAACCAGAAGGGTTCCGTTTTGACCATTGGGAGAGGCACATtcactgattttaaaataaaacttaaatgatattttatttaattttttattgatgacggtacatttaaaaacacttgcaaaaatttaaaataaaatgacaatacaaGAACAGAGGGAAATCTTTCTGTGCATCTCACTAAACACTTTTAAGATCAGATCTTTGCTATAGCTGTAGGGCAAAGTTAAAGCCACAGAATTGGGCAGTTTTAtgagagatgtttttttatcaACATGGTAAAGGGTAGTGAATTAGTGGTCTGAGAATCTCTTTCTGCATTTTCATAaactgaactaaaataaaaatagttccGACCACTCAGTGGGAActgtttttaagaaatgtaactCCCACGCAAAATCAGTGGGAATTTTTTGCTTCCACTCGCCCACCGCGGATCgttttacataaatattgcATGTTTGCCGCCTTTTTTCTCTTCATATGTTATGAAGAACTATACAAAGGACCCAATGCAGGAGAGAAGTTCTATTTTAGGAGTCTGAAGACGTGAAATTAAAGAGGTTTAACTGAGCTGAGCGATTTGCTGAAGAGAAGTATCTGTGCAACAAAAACTTCCCTGCTTTACATGTCCCTGTTCATCTGTTCTAAACAGAAATGTTGCCAGAAGGAAGATTTTGTTTCACACAAATGTGCTTTACTTTGCATAGAACACAACCTTCAGAGTCCCCTTTATTCTGTAAAGATCTGGTCTTAATGTAAGTAAAATTGCAATTGCTAAAACCTTTTGTAAGTGCAATAACTTAttgctaaacacacacacacacacacacacacacacacacacacacacacacacacacacacatataacatGAACAAGATTAAAAGtatcaatataattttaaaagcagtacAATATTGCTTAAAGCTgtcaaaaccttaaaaaaaaaagtttattttcaaagcattgtATATGGCAGCCAACAAActgaacaaatgaaacaaaataacctTACATTTCTCATAAAGATACAATACTTTACAACAAGTTAGTTAAATTTTTCaagggtctttttttttttaacactggaAATCaataaatttacaaaaaaaaatccacgcGCGCAcacaaacaaggaaataaaaccccaaaaaaacgaattatactattatattaatttggaaATTATATTGCCTTGCTTCAGTAGTATTAGAAATGGTAGAGGAAAGCAGGGGGGGTAAGGTGGGGATGGTAGACAAGGCACAGATGTGAATATTCCTATTGAAAGCTTTTTGGCTAAAGTGTAATCCCAAAACACAGCACCCCCCAAAGTCTGGGAGGGCTGCCTCATCCCCTGAGACCAAAGGGGGTAAAAGTAGGGGTTTTGGGGGGCAGGAATTTTATTGCATCAGAAGAGGAATACAATTTTAAGCTCAGTTTAACTATATGCAAGAATCTATAAAATGTCTAAGTCAACCCAGTCTAAGTCAAACATAGTCTAATTACTGTATGCACCTAATCTcaagtgtgtgagagagaatgtatcctccttttaaaatgtaaagttttaaatgtcttcatttttaaaaacaacaggattTCTGATTATatagacaaattaaataatatgaaatgctgAAGGTTAAACTTGCAGGAATTTTATCTATGTCTTGCAGCTAACAGACACTCATTGCTGTGAAGATGAGCCGCTGTGCAGCAGAGCACTTGGTTACCGTACCTATTTTCTGCTCTTTCCGTTTGGTCACAGAATCCATTTGCACAGATGGCTCCgtgttaattaaaaatcctATTTGAATCCGAGGTTATCCGTAATGCACTGCAGCGGATCCCAGCTTTCGATTGCGTTTTTGCACCCTGGGGTTGTGTGGAGCTGGCGGGCATGACGATTCTTTGAAAGAGGAGCTATGACAGCTGATGGTAAGCATGTGCaatggttgtttgttttgtatttaactcATTGCAGCTGCATGGACTGTCCTTTTCCCAGGACACTGGATCGCAGTGGCTGTCTAACCCATATGGCCTTTCTTAGCAGAGAGCATAAGCACAAAGGCAATTTTCCCAAAACTACTGCGCAGATTTCAGATGCAAGGAGACAAGTATCTACATACAGTTTAGAGCCATTTCTTAAGGCTATGGCTCTGATGCAATATTTGTTCCTTTTATGGTGAATGGAACAAACAGCCCAAATAGCCTTGTCAACACTGGTCATAAACTgcataatgtttattattttgtaaccaGGAATGAACATTACAACAGGTTTCTGGTTACACTACATCATGGTTCTGGTCAGCTTGCTTTGGGAACAGTTTGATCCTAAACTTTCCTTCAGGGAACTTCATTTTCAAAGGCAGCCAAGGACTTTTCCTCATCCTTATAGggaaattttatttttctgtatttaaaaaatattgattatttattttgcacttttgcaGCTGACAGTGAGTAGCACTTGTAGTTTCTGAATGTCCCTTTAAAGTTCCCATTTATGCTTTGCTTAAATTTCCCTGTAGCTAATGCTGAAGGAGCAGCAGATCTGTGTAGCTGGTGCTGTAGCATTTAGAGCTGCACCTTCATTGAGTGAAGAGAACAAGGAGCAGTCGGCAGGAAAGAATTATCATATGTTAGCGTTATTaatatggagagagaggaagcaATTTCAGCCCTGTGGGGAATTATGTGGATTACGtaaattacattgttaaatACAGGAAAATCCTCTGTTGGGATATATGGGGAAAAAGGTCAATTGACCTAGAATCCTTTGAATTTCAAAAAATCTACTcagtaaatgcattttctcaAATGAAATCTGTTGCaggtttaaaaaacactttttcatcTTACTTCATTCATTCGTTGTTTCTTTGCATTTGCAACACTGGCAAATGTTAATTTCCTCTAacttatatatcagaaatgggTGGATCAAGGCCGATTTTAGACTGTGACCAAAGAACAATACTTTTATTGAAATATGCCAAACTTGCTGCATTTGTACATTATGGAAAGCAGAGAAAAGACCATTGGCTTCATGCCTTCATACTGTTTTCCCTCTCTGGAATAGGGACCCTTGATTATAAGTTCACaatgaacaaatgaacaattccttttcttttttaaagagcTATTGTTCCTTTAGATTCCATTTGGGATTTCAGGGAGATCTCGAATAGAAagcaaataatgtgttttttatttgtaaatttggAATCACTTTCCAAGGAGCTGTGTATCAGATGCAGTTTCAAATTTAAACcggatttgaaaaaaaaaaaaaaaaagatccattATCTTAATCTGACCCCCACCTCCAACCATCACCACCTCTAAAATTGTATAACCCAAGTCCAGCGCCAGCAGTATGGTACAGCCAGTGCAGGTTCGGGTCACCTTGTGTCCATGCCGAGTCCTGAAGTGGTCTGGCTGACGGGTAGGCCTTGTTCTGCACAATGCACTTTTTTCTGGACTGAAACCGAGCACAGACAACAGGGTGCCAAGGAAAGCCCTCGAGCAAGTGGGTGTTAGGGGGGGGAAACCAGATCCTTCATCTGGCACAGCAGAGGTTTTTCTTGAAATGGTTTTGTGAGGGCAGTTGCCAGGAATTAAATGAAGCTTGGCTCAAAATTCAGTCTGAACCTCCGACTCCTTTGCCACCCTTAATTTTCCCCTGGCTTGAGCTGCAGGTGTCCCTGACTCCTCTCTCTGCTTGGATCATGTACAGCTTTACATGGAGATTCGTCCCCCTCTGGGTTTTCTGCTGTGCTTTCACacctttacttttatttttaatataattttaagggCATGAACTTGCCGTTCAAGAAGAAAAATTAATGCAAGTCTGGATTATAACATTTCTCTTTAGCCAGCAGGCCATGAAGTGATTTTCAGGTGTTGCGAAGGTTTCTCGTGGTAGCTTAACAGTAAAAAGCATATTCCTTAGCAGATTAACATGTGGTTTAACACAAGAGGCCAATATAAGAGCAATCCTTTCACCCCAAATAAGATGGTTCGATGTGATCGGTTATCTATCATATGTCTCAGTTTTAATGTAACTTTAACTTTAATGTAGCTTTAATGTTGTGCACCCCATGAAAAGGTATAGACTGATTGgtacagtatgtttttataaattaattccCATGAAAATCACtccatgttttttcttgttatggTTTTTCTCCTACAGACAAAGTTTACTTATTATTGAGATGGGAAAGTCTTCAGTGGAAACTGCCCAACTCCATCACTGTCCGTTTAGGCACAGGAGTTTGAAATATCGTGATTTGTAAACTTTAAAATCTTGATGTTGCAGAACAAAACCTGGAGTCGTCTTTCATACCCCAGCAGACTAATATGAGcacacatttcttttaaaagcagaaatgaaTTATTGCATGACCATTTTACAAGCACTGTTGGGGGTgcggtggggtgggggggtgacgAGGGGAGGAGCAGTTGGAaaaattgtttgctttttctctgCGGTGAGGATGTTGAGAGACGCACTAGAAGTATGAAAAAACGGCCATTTCTTAGGGGTTGTCGATGATGGACTCTAGAAATGAAGCTAAACCAGGCTTTTGGGATTGGTTTCAAGGTTGCTACTCTGTGTTATTCCTGGCCGCTGGGCACTGCGGGAGAGGGGACGCAGTTTTCCTGTAACCTGAGGCTGGGGAAGGGGTTCCTTTGAGGCCCTGCTGAGCAGGGCTGGAAGAGTTACCTGTGGAAATGGCTGGGGAGGAAATAGCATGTCCACTTTAAATCAATGCCAATCTCTCACCTCACTCCTGAAACAGCAGAGGCCTGTCTGGCGCTCCCAGGCCCTGCCGCCCTCGAAGCAGCAGGCCTGCTGTGTTTCGCCAGTTCCTCGTGAATTTGGAAAGCGCTCCTAAAGCTGTCATAGAGCAGCAGAGAGTGTCTGCAGGGAAGTATGGAGAGCGCACGGACCGGCAGGCACTGTGAAAGCCGGCAACAACTTAAAGGATGCAAAGAGAAAATTCTCCTGCCGACCCCTGGAAAATAGTTTTGGAGTCGTTTACTAAGATAGGTCGAAGATAAACTAAAATCCTGGCAATACATTCTTGTTATTTTATAGATGTTTACAAGTATACAAAACCCTTAAAAAGGGGTAGAGCCTCCATTGTTTAGGTTATGTGTAGCCATTTAATTATGCTTTGATGTTTCAAAGttgtgttttcctttgattGGTTTTCTTGTGTTTGATTGCACTGCAGAGTGAAATCTGCTTTTTTGTGAAGTTAAAAAATGGTCAAGTATGTCAAAAGCAGgatgtttgtgttatttttcagtttaatttccaaaatgttttactCTGAAAGGCTTTGCAATTAAAGCAAGGACTGATTTACACAGACTGCAAAGATAAAAGGGAATGTTAGAACTTTGCATTTTGGTTTACTGAGTGTAAGTTAAAGTTTGATTTAAAAGGGGGTAAataggtaaaaaataaataaatggtgaaatAGTTTTATTCCTTGACATCACTTTTCTCCTCTGCAGGCAGATTTGGCCTGACTTAACATCAGTGTGTTGCATTACCTCACCCCAGCAAccccagaagaaaaaaagagattGAACCCCTTTGAGGGGAAAGGGATGtggttgaataaaataaaataggagGGGGTATTTAAGTACTGTAAAACAAGAAATTGAAatggtcaaaataaataaattaccagtTGCTACATGCtagttttcaaaatgctttttacATGGTTTAGAACAGTTTGTCTCCCAATGCAAACGTGGTGCTTCAGTAAGTCGGCTTGCCCCTCTCTGACACACTTGCACTTCGTATAACAAATTGTGTAAATGGAACTTGTTCTTGATGAACAACATTCAAATTTCTTTCTTCTGTTAATGCCAGGCAACcaaacattgctttattttttttcctcattaatttaattttggccTTTTTGGTGATCCCACTTTTTGATGTCGTTGCCGTTGTGGAGAACCTAAAACATTCCCCACTTCTCCTAGAGGTGgatcttttcttgttttacagtGACACAGTCTCCTCATCTTCAACACACACGACTTGTGTCTGACCTGTTTTATCAGTTAGCCCAGCATGTGTCTGTGAAATGTCTCTGCTGACTCACAACGCCTCTGTACTGCACGAGTCTGTGTACTCAATTTGCgacatttgttaatttgtttttcagttttattttttttatattttttttatattttttatttttttcttcactgttttcattgatatagcttttcttttttctctgaaattaaattagaagACCACCCCCTTGGCGTAGGACATCATGATGCCCAGGAGATAGCGGCACTGTGTTCTTTAGCTTTCATGCGTAGCGCGGCAATGCTGGAGGACTTGCGATCTGGCTCGGCGTTGAGGTCATAGCCATTGATTCCTCCCCCGATTCCAGGGTTCCCAAACAAGCTGCCCATGTGCGTCTGTCCCATGTGCCCCCCTGGGCTTGGCACTCCCAGAAAATCTGAGACGCCTCCTGGAGTGTGAGGGTGAGGGGTCATGCAGGAGGTCACCGTGTCACAGGGCATCACACAGCCAGGTACGGGAGAGCCGGCGTTGCTGCCCCCAATCCACGATGTGTTCTGGAT

Function

symbol description
alx4a Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in cranial neural crest; head; head mesenchyme; and pectoral fin bud. Human ortholog(s) of this gene implicated in craniosynostosis and parietal foramina. Orthologous to human ALX4 (ALX homeobox 4).
alx4 Enables sequence-specific double-stranded DNA binding activity. Involved in hair follicle development. Located in nucleoplasm. Implicated in craniosynostosis and parietal foramina.

NR:

description
PREDICTED: homeobox protein aristaless-like 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28103 True 6691 lncRNA 0.40 2 9633809 9640829

Neighbor

gene id symbol gene type direction distance location
AMCG00007269 NA coding downstream 122470 9495648 ~ 9511339 (-)
AMCG00007266 nat10 coding downstream 146121 9473893 ~ 9487688 (-)
AMCG00007268 NA coding downstream 207027 9411640 ~ 9426782 (-)
AMCG00007259 NA coding downstream 250122 9350044 ~ 9383687 (-)
AMCG00007262 rps13,LOC107586033 coding downstream 294654 9335727 ~ 9339155 (-)
AMCG00007272 ext2 coding upstream 3606 9644435 ~ 9683079 (-)
AMCG00007271 kcnj11,LOC106561047 coding upstream 45277 9686106 ~ 9687263 (-)
AMCG00007273 abcc8 coding upstream 49444 9690273 ~ 9750042 (-)
AMCG00007274 ush1c,LOC106561052 coding upstream 114095 9754924 ~ 9792167 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding upstream 298362 9939191 ~ 9943224 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 8931 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 34655 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 196540 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 448980 9181018 ~ 9184829 (-)
G22298 NA non-coding downstream 652991 8976117 ~ 8980818 (-)
G22505 NA non-coding upstream 392299 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 444931 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 732910 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 906167 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 970360 10611189 ~ 10612988 (-)
AMCG00007267 NA other downstream 170472 9457488 ~ 9463337 (-)
G22200 NA other downstream 1237585 8393196 ~ 8396224 (-)
G21942 NA other downstream 2126934 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2291468 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3579745 6007640 ~ 6054064 (-)
AMCG00007282 NA other upstream 319233 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 511651 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 546479 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 624216 10265045 ~ 10272695 (-)
G22838 NA other upstream 3710688 13351517 ~ 13352073 (-)

Expression


Co-expression Network