G22417


Basic Information

Item Value
gene id G22417
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9642597 ~ 9644747 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28104
CGCTTGTATCCGTCAAGCGCGTGAGTCACTTCTGCCTGCTGACCTTCATCATGTGACTTCTGCAGAGAATAAGTTTCAcacagaattatttattatttgcaataCCATAAGTTTGTTTTTAGAGACATAATTAGAGACACAATATTGAcatcttttttatgtatatacattaaaaaaactaattacaaaaaacaaaaaaaacagacatgtaaAATTCcagctggaaagaaaaacaaaaaaatgtgccttacagtttacacacatGATGGAAGACAAGCAGGCACTGAAAtgctaaacagaaaaaaaacacatgaatgttAAGGACAGAAAGTATGACTTTCCCCTATTTGTAAACTATAAAGCTAAAGGAAGCCATTAAGCTTCATGAGAAGTTTGCAATAGCAAGCTGCTTTCTGTGGGTGCTCCCAAATTCTAGCGCCAGGCTTTTCATTTACacctgtcttttttcttttacgtACAACTTTAGAAAGCAATGCCGCATATTTGCCAGCAGTCTGGTCagtaaagattttatttttacctgtgAGCAGGTCCTAGTTATCCAATGGAAACAAACTCTATGGTTACTTTCCGCACAAAAAAGTAGATCAGCAGAAACATTTGTGTTCCTGCAGACAACTGACCAAAGTATGGAGATACACCTCTTCTCACACCAAACCTGAAAGACGTTAAAAAGGCAAAGGACATTTGAAGCAATGTAGGCTGTAAGTATCTAACAGATTACAGTTAAGTGAggatcaattttaaatgtattttttttagcttctcttttttttttttttttttttttccccgatTCTTGATTCCAACTTTATTGGGCTACAATGCAATTAACCCTTTTACATAAGCTCTAAAAgctggtgtgtgtgagagtttaataaaacattttaacaacgACAAGGGCTTTAGTGTATGTGGTCCAGTTGTGAAGAGTCAGATTTTCATCTACCTCGTACAACAAAACGGTTAATGCTTGTTATTTACTTTCAACAGTTAACAACTGAAATGCTTCACTGTACAGTTAGAAAGATTGTGTTCACTAGACCACCAGGAACAGGACTCTGTTCTTTAGAAAAATGAACAACAGTACATGTCACTACTGCTGAACTAGCCACTATTGATACAGGCAGAGGGGTGCTCACCAGTGAACATGGGAAGTGCTTCAATTTTTACACGGGGAAAGGGTTTACTTGGAGTCCAGTGAACGCACTGCCAAATGACACTATGTAATGACACAGTAAAAAGGTAAAATTATAGTAAAAAGGCTTCAAGTCACGAAACTCTCTAAACATTAACTCGTGTACTCTACaactgtgtgtgtcagactTGTTGCGAGTTTCTAAAAGAAATGTACGCATTTCAAAAACGGGGTGCAGTCATTATAAATTTGGAACGTGATCCTTCCATCGAGTTTTAGGAGATCACATGTTGAACTGCTTCCAAATTCACTGAGTCGTTGACCCTGCTTTGCCCTTCACTGTTCCAGAATCAAAACAACGATCTGTCAGCACCAGCCGGGTGAGAAAAACTCTTGTGAGGTCCATTGGGCCCAGTTCTAGAGGATTGGTAGATCCAGTACAGTGCATTCTTTGTTCACATCAAGCACGTCCCCCTAATTAGGAAGACCAATGCCAGCGTGGCTTTGAGAGTCAATCATGGATTGGATCTGGTTCTTCAACATAAAAGCTTATATGAGAATTTCCTTTGGAACCTTCAAGCAAAAATAACTTAAAGTTGCCCCTTCTctgaccccctcccccccccctccccctcctatAGTCTTTGAAATTTGAAAGCCAGCCCATCTGTCTTGCCCAGGTAAGCTGATATGAAGCCGGGCCTCTTTGAGTTGGAACGGTggtatttgcatttgaaaaggcTGGGGTGTCCTCCCCAAGATACAGAAGAGGTTTGGTGTCCCCCACTCCGCCCTGCCTCTCATAGGCTCCCTATGTTGGGAAAGCTCTTGAGTTTCTCCGGGAAGTCGTCCTTGTAGAGGACAGGATCGGCCCGATGCTCCACCACCTTCAGGGGCATCGTTCCGAACACAGAGGCAAACTTGTTAATGCACTCGGACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28104 True 2100 lncRNA 0.41 2 9642597 9644747

Neighbor

gene id symbol gene type direction distance location
AMCG00007270 alx4,LOC107593440,LOC107754690,LOC107683603,LOC107688160,LOC107750553 coding upstream 8471 9624501 ~ 9634126 (+)
AMCG00007265 lmo2 coding upstream 115947 9522434 ~ 9526650 (+)
AMCG00007264 NA coding upstream 209282 9430419 ~ 9433315 (+)
AMCG00007263 nucb2a,LOC107688161,LOC107750551,LOC107585938,LOC107085590,LOC101472988,LOC102310665 coding upstream 232509 9396853 ~ 9410088 (+)
AMCG00007257 NA coding upstream 456749 9178903 ~ 9185848 (+)
AMCG00007276 NA coding downstream 148987 9793734 ~ 9849791 (+)
AMCG00007277 NA coding downstream 277122 9921869 ~ 9925952 (+)
AMCG00007275 myod2,myod1c,LOC105028891 coding downstream 286141 9930888 ~ 9932943 (+)
AMCG00007286 NA coding downstream 422484 10067231 ~ 10071468 (+)
AMCG00007287 ctsd,LOC107382058,LOC107686244 coding downstream 429041 10073788 ~ 10086146 (+)
G22373 NA non-coding upstream 149930 9488712 ~ 9492667 (+)
G22364 NA non-coding upstream 246117 9396221 ~ 9396480 (+)
G22344 NA non-coding upstream 303497 9335718 ~ 9339100 (+)
G22285 NA non-coding upstream 664401 8976101 ~ 8978196 (+)
G22230 NA non-coding upstream 1038539 8592139 ~ 8604058 (+)
G22528 NA non-coding downstream 507742 10152489 ~ 10241408 (+)
G22596 NA non-coding downstream 675722 10320469 ~ 10321858 (+)
G22652 NA non-coding downstream 981927 10626674 ~ 10685068 (+)
G22712 NA non-coding downstream 1466596 11111343 ~ 11111723 (+)
G22720 NA non-coding downstream 1585078 11229825 ~ 11230393 (+)
G22372 NA other upstream 142869 9436524 ~ 9499728 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other upstream 931286 8697983 ~ 8711311 (+)
AMCG00007242 NA other upstream 1191015 8431102 ~ 8451582 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other upstream 1246355 8367436 ~ 8396242 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 1459176 8147398 ~ 8183421 (+)
AMCG00007278 NA other downstream 292173 9936920 ~ 9965267 (+)
AMCG00007307 clg19h11orf96 other downstream 966449 10611196 ~ 10613104 (+)
AMCG00007337 NA other downstream 4833926 14478673 ~ 14489692 (+)
AMCG00007352 NA other downstream 5631964 15276711 ~ 15287960 (+)
AMCG00007350 tsg101 other downstream 5721914 15366661 ~ 15379965 (+)

Expression


Co-expression Network