G22505


Basic Information

Item Value
gene id G22505
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10033128 ~ 10044315 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28216
GCGCACGCTTCTGAAGCCTACAAGGAGCTCGCAGGACacaactacatttcccagaaccCCTTGCGTGTCGCGTATTTGATGCAACGGGATTGCCCACGTGAGCTTCTTCCAGCTGTGTGCACATAGAAAGAGTGAATGGCGAGAGgGGGAACAGAAAATGGAATCCATAGAAAAATGGAACAAAGAATTTATAGCACTTAAGCTGTTGGATAAAAAGTTACACTCCAAGAAGAATGGCACGACAGGCATGATTGCAAAGCATCTCCACAATACCCTTAAGTGTTCACAGTCATCCATCACTCGTTCAGAATGCGGTACTGGGGAATTTTGATACAGTGTGATCTCAGGTGACCAGATGATGTCAATCAAATATGGCAGCGCGACACAACGAGAGCGTCACACACAGAAGAAACATTGCCTTAGCCAACGAGCTATGGGAGATGGGCAAGGAACATTTTCAAGACCCTGAGTTTGACTTGTGTGAGATTGACAGACAGTCAGCTTGGAGTAAATATAATGCTGGCAATGGTTTAGGTTATGGAAGGTATGGAAGGCAcaagtataaataaaatctagaCGAAAATCATACATTATGTGACTTGGCTTATCTTGGCAGTCTTCAAGATTTTATGGTTCTATGGGATCTGAgtgttttacaaagaaaaataaaatctgaatgtTTACTGTGACGCATGGAAAAATCCAGTGTGACAAGCAATTCTGTCTGTCTCAGGTGTGGGGAGATCAGACCAGTATATCATAATAAATGTTGAACTGAGGGACTTCAAGCATTGGATGCTTACATTTCTCATCTAgtattgtttctttctgtaaagTACCCAACAATCCTAATTTCTAACTTGTGCCATAGTTCCAGTCCCAGTGACTCAGTGTGTATACATGGGCTCAAATCTCAAATGTATCTTtacaccacaaaacaaaaaataatattgtgaatACTCCCTCTGTGAGGGTTTCAGTTGTACTCTATTATATGTTCTGTGGGTTGGTGCTTGGGGAATGTTGGGCGATTCAGTTGGTATTTCATTAACTGGCGTTTTGGCCAGTGCTACTGATCTCTTTACAGAAGCTTTGTCATCGTAACTTTACATAAAGTAAGAGGATTGATATGCAATACAGATATTGCACTATTTTACATGTCTGAAATCTCATCCTGATAATTAGCTGTCCTCTTTTATTTTAGACCTTTTATGATTAATAGATCCACATCCATTTTTTCATCTTTGAAAAGAAACGTGGTACCTCAGTGACATTATCCAGTAGAAATAAGcatgtattaataaattaaagtacattaattcattaaaataaatatggatgTGTTAAGTTGAGTTTGGCTGGGTTTAGGCCAACTTGATCTAGGTTTTTCTCTTCTTAGTTAGATTTTAATAAGATTGTCCTGGTGGCCTCATTTATTTGACTGCTGGCATTGTCTGATGTAAAAACCTTTCTTGTATGAGCAGAAATGGTTAGCATCTCCTTCAGTTCCTTACtcaatcatattattattactattatcctTCTCAAAACCATATCTGAGCCAGATGTACCCTGAGCACCTTGACAGTGAATTTgttaatgtgctttttattttgtttaatttgtgtttgtttaaaatgaataggaagTCCACTATGGAAGTGATTGGTTTGGTGCCTTTTCTGTAACTgtcctttgtgtttgtgttgagaCACATTCACTTGCTGCATGCAGCTGCAGGTTCGAGTTGTCACTCCTCCTAGTGGGAGTGCACTACAGACGCCAATAGTACAGTGGGTTCTATGGAATAACTTTTGATGTAATAACTCTTGAGTTCAGTCTCAATGGAATTCAAGAGTATTTTAGTGTTGTTCTGTATGATAAAATGGTCTGTGCAGTGCCAGTATATTTTGATATCAATGCAAAATGTGGTGGTGACCAATGGAAGACCGTAGtacatcataaaatataatacttcTGTTATTTATGCTGAAGTAGCTGTTTGCACCTTTTTAATGGTTTTCGTCAATGGTAAAACATAGTTGATATTGTTTGAATTTCAGTTAATAAAAGTAGTTAATTTTATGTTTGAGTAGTCACTTCCTTAGGAGTGAGtgatcttttacattttttctttgtttctagCTCGATTTAACTAGGTTTAAGAACTTATGCACTCAGGTGACTTTTTTTGTAGGCTGAGAAATGTTTTGGTATCAATGTTTTGATTGGAACAAAGTTTACAGAATCTGTGAAGCAATGTATTGCCTGTATCATATTTTTTCCAGCctcatgtatttgtat
>TU28217
GCTGTCTCTGCAGCCGTAACTGGAACATCAAAGTTTTGAGTGAAGCATACAGACAATATCCAAGcAGGGGAACAGAAAATGGAATCCATAGAAAAATGGAACAAAGAATTTATAGCACTTAAGCTGTTGGATAAAAAGTTACACTCCAAGAAGAATGGCACGACAGGCATGATTGCAAAGCATCTCCACAATACCCTTAAGTGTTCACAGTCATCCATCACTCGTTCAGAATGCGGTACTGGGGAATTTTGATACAGTGTGATCTCAGGTGACCAGATGATGTCAATCAAATATGGCAGCGCGACACAACGAGAGCGTCACACACAGAAGAAACATTGCCTTAGCCAACGAGCTATGGGAGATGGGCAAGGAACATTTTCAAGACCCTGAGTTTGACTTGTGTGAGATTGACAGACAGTCAGCTTGGAGTAAATATAATGCTGGCAATGGTTTAGGTTATGGAAGGTATGGAAGGCAcaagtataaataaaatctagaCGAAAATCATACATTATGTGACTTGGCTTATCTTGGCAGTCTTCAAGATTTTATGGTTCTATGGGATCTGAgtgttttacaaagaaaaataaaatctgaatgtTTACTGTGACGCATGGAAAAATCCAGTGTGACAAGCAATTCTGTCTGTCTCAGGTGTGGGGAGATCAGACCAGTATATCATAATAAATGTTGAACTGAGGGACTTCAAGCATTGGATGCTTACATTTCTCATCTAgtattgtttctttctgtaaagTACCCAACAATCCTAATTTCTAACTTGTGCCATAGTTCCAGTCCCAGTGACTCAGTGTGTATACATGGGCTCAAATCTCAAATGTATCTTtacaccacaaaacaaaaaataatattgtgaatACTCCCTCTGTGAGGGTTTCAGTTGTACTCTATTATATGTTCTGTGGGTTGGTGCTTGGGGAATGTTGGGCGATTCAGTTGGTATTTCATTAACTGGCGTTTTGGCCAGTGCTACTGATCTCTTTACAGAAGCTTTGTCATCGTAACTTTACATAAAGTAAGAGGATTGATATGCAATACAGATATTGCACTATTTTACATGTCTGAAATCTCATCCTGATAATTAGCTGTCCTCTTTTATTTTAGACCTTTTATGATTAATAGATCCACATCCATTTTTTCATCTTTGAAAAGAAACGTGGTACCTCAGTGACATTATCCAGTAGAAATAAGcatgtattaataaattaaagtacattaattcattaaaataaatatggatgTGTTAAGTTGAGTTTGGCTGGGTTTAGGCCAACTTGATCTAGGTTTTTCTCTTCTTAGTTAGATTTTAATAAGATTGTCCTGGTGGCCTCATTTATTTGACTGCTGGCATTGTCTGATGTAAAAACCTTTCTTGTATGAGCAGAAATGGTTAGCATCTCCTTCAGTTCCTTACtcaatcatattattattactattatcctTCTCAAAACCATATCTGAGCCAGATGTACCCTGAGCACCTTGACAGTGAATTTgttaatgtgctttttattttgtttaatttgtgtttgtttaaaatgaataggaagTCCACTATGGAAGTGATTGGTTTGGTGCCTTTTCTGTAACTgtcctttgtgtttgtgttgagaCACATTCACTTGCTGCATGCAGCTGCAGGTTCGAGTTGTCACTCCTCCTAGTGGGAGTGCACTACAGACGCCAATAGTACAGTGGGTTCTATGGAATAACTTTTGATGTAATAACTCTTGAGTTCAGTCTCAATGGAATTCAAGAGTATTTTAGTGTTGTTCTGTATGATAAAATGGTCTGTGCAGTGCCAGTATATTTTGATATCAATGCAAAATGTGGTGGTGACCAATGGAAGACCGTAGtacatcataaaatataatacttcTGTTATTTATGCTGAAGTAGCTGTTTGCACCTTTTTAATGGTTTTCGTCAATGGTAAAACATAGTTGATATTGTTTGAATTTCAGTTAATAAAAGTAGTTAATTTTATGTTTGAGTAGTCACTTCCTTAGGAGTGAGtgatcttttacattttttctttgtttctagCTCGATTTAACTAGGTTTAAGAACTTATGCACTCAGGTGACTTTTTTTGTAGGCTGAGAAATGTTTTGGTATCAATGTTTTGATTGGAACAAAGTTTACAGAATCTGTGAAGCAATGTATTGCCTGTATCATATTTTTTCCAGCctcatgtatttgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28216 True 2304 lncRNA 0.38 4 10033128 10042925
TU28217 False 2225 lncRNA 0.37 4 10033128 10044315

Neighbor

gene id symbol gene type direction distance location
AMCG00007279 NA coding downstream 1445 10025484 ~ 10031683 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 89904 9939191 ~ 9943224 (-)
AMCG00007274 ush1c,LOC106561052 coding downstream 240961 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 283086 9690273 ~ 9750042 (-)
AMCG00007271 kcnj11,LOC106561047 coding downstream 345865 9686106 ~ 9687263 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 4866 10049181 ~ 10056129 (-)
AMCG00007291 NA coding upstream 46998 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 117137 10161452 ~ 10186176 (-)
AMCG00007294 sirt3 coding upstream 175000 10219315 ~ 10228702 (-)
AMCG00007296 NA coding upstream 203962 10248277 ~ 10260107 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 392299 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 408250 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 433974 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 595859 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 848299 9181018 ~ 9184829 (-)
G22513 NA non-coding upstream 41445 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 329424 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 502681 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 566874 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 584033 10628348 ~ 10631934 (-)
AMCG00007282 NA other downstream 31963 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 569791 9457488 ~ 9463337 (-)
G22200 NA other downstream 1636904 8393196 ~ 8396224 (-)
G21942 NA other downstream 2526253 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2690787 7324424 ~ 7342341 (-)
AMCG00007299 NA other upstream 108165 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 142993 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 220730 10265045 ~ 10272695 (-)
G22838 NA other upstream 3307202 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3901328 13945643 ~ 13946065 (-)

Expression


Co-expression Network