G22660


Basic Information

Item Value
gene id G22660
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10546996 ~ 10578902 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28431
caccagACTTATTTAGGAAGCTTTTATTGCTAGAAATTCTCAAGTCatcagttttattcattttttccaaatCTATTCAGGAGGAGCATCTCAGAGAGCCAGTCAGCACAGGCAATACACACATTCTCCATTCTCATTAACACACAGGGTTTGACTTCATTAACTAGTTTGTTCAATTGTGAAAAATCAAAGCAGAAAGGCTATAGGTTAGAAAAATTCTGTACCATTACACACCCCTTTTGCATTATAGCACAAGAAAAAGTGCAAGGAATTAAGTCTCAaagtaaacacacaaaaaataaaattagtacATTTCTAAGTTGAACCCTCATTCCTATACAGGTGGGTTTTGTTAAGTGAACATTAGACTACAGACCATTGTTCTTTACATCATAACAGGCTGGTTCTAGGTCCAGCTGTAGAGATGATCTGGATTACAAGTACCATAGCATTTGCATTCAGACTGACAGTTAGATAAAGCCACCAATTAGATCAAATTAGTTTGTCTTATAAAggatagttgtttttttgtatccttTGGATAAGTGCATAATTTATACGAAACAGGTTGCAAGTCGACAAACGGGAGggaaacaaaagcaagaaaaaaagtcTACCCATTCCAAAAAGCAACActtttgcatttaattcagtGCATAAGGTTATGTATGAACTAGTACATGTACATAGTACATCATTTAGATTTGAAATTCCACTGACtgcatttggatttttttttttttttttttttttttttttttttaacaagtcatccatttcagtgtcagtgtgatCAGCTCATTGCAGATGTTCTACGTTGCCTTCACCTCCAGGATCATGCAATGCGTCACTGGAATGTCAGAATACTGCAGGGTAGTGTAAATGGATGgataggttttattttctcttatacACTAACATGCAAAAGTGCTGCCCTAGGAGTATGAGGGTTTTACAGAGATTTCAGTTTTCCTAGAGGGTGGCATGGGATCTACAAAGTCATATAGCAAACTTCAattttatgagtaactacaCATAAAGGtcaaaacaagtttaaaaaaaaaaaaaaaaaaagttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28431 True 1079 lncRNA 0.34 2 10546996 10578902

Neighbor

gene id symbol gene type direction distance location
AMCG00007302 NA coding downstream 174049 10361701 ~ 10372947 (-)
AMCG00007295 NA coding downstream 220175 10320340 ~ 10326821 (-)
AMCG00007297 NA coding downstream 227365 10313591 ~ 10319631 (-)
AMCG00007296 NA coding downstream 286889 10248277 ~ 10260107 (-)
AMCG00007294 sirt3 coding downstream 318294 10219315 ~ 10228702 (-)
AMCG00007309 NA coding upstream 173336 10752238 ~ 10753836 (-)
AMCG00007312 NA coding upstream 1565014 12143916 ~ 12262705 (-)
AMCG00007314 NA coding upstream 1683931 12262833 ~ 12263877 (-)
AMCG00007313 NA coding upstream 1684992 12263894 ~ 12307056 (-)
AMCG00007315 lrrc4c,LOC106573348,LOC107670198 coding upstream 1738929 12317831 ~ 12319714 (-)
G22619 api5 non-coding downstream 171777 10373739 ~ 10375219 (-)
G22513 NA non-coding downstream 460613 10085760 ~ 10086383 (-)
G22505 NA non-coding downstream 502681 10033128 ~ 10044315 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 906167 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 922118 9624566 ~ 9624878 (-)
G22680 clg19h11orf96 non-coding upstream 32287 10611189 ~ 10612988 (-)
G22671 NA non-coding upstream 49446 10628348 ~ 10631934 (-)
G22687 NA non-coding upstream 75272 10654174 ~ 10655530 (-)
G22713 NA non-coding upstream 532443 11111345 ~ 11111723 (-)
G22725 LOC103376870 non-coding upstream 685740 11264642 ~ 11282409 (-)
AMCG00007298 NA other downstream 274301 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 300250 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 356792 10187308 ~ 10190204 (-)
AMCG00007282 NA other downstream 545831 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 1083659 9457488 ~ 9463337 (-)
G22838 NA other upstream 2772615 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3366741 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3402472 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 5658559 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 5742095 16320997 ~ 16345580 (-)

Expression


Co-expression Network