G22687


Basic Information

Item Value
gene id G22687
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10654174 ~ 10655530 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28469
CAAACTTTGCGTTAGGATCAGTGTATTTTCCCTTTACATCTTAGAACATCCTTTTAGCCTTTGTTTGAATAATAATTAGGCTCAGCggcacacatttttaaatctgatttttCATCCAAATTGTTAATAACTTTTCCATTTAACAGATGGTACAGAATGCCGTTTCATTATGATTTTGCTTACGAACAGGTAagagCAGTGAGTTGCGCCTTGTTTATGACAGCAAGGCCAATCGTAGTGCAGGTTATGTAAATTGACTTCGTATgagtgatatttaaaaaaaacacacttaaaaaatgGCCCCAATTCAAAAGACATTTTGCATCAGAAGACCAATAAACATACaggccattaaaaacaaacaaacatacaggcATAGTGTGTTCTAGATCTATGACCCCGTCACTCCTTTGGTCTATCTATAAGCTTGCTGAAAACTTCAAACACTTCAGGGTTATCCTGGGCGAATAATTCAGGAGTGTTCTTCTCCAGCCAATCAGAGGAGCGCATCTTTTGCCGTAACACACCAATCAGACTGTCCAGTTCTGCAGCTGGGGGCACTGACAGACATGAGACCTGCACaacatcatcatcttcatccaATGAGAAGTGTGGGTCCTGGCTTTTTGTCTCTGCCTGGCTCAGCTTCTTCCTGTTGGCAGCTTTGGTCCTGCCCTCTTCTCTGGGCTTCCTCTCCTTCCCCGATTTGTTGATCTTATTCCGGTCTTCTGATTGGTCCCCTTGATTCAGTTCTGCCAGGGCTTCTCTAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28469 True 772 lncRNA 0.42 2 10654174 10655530

Neighbor

gene id symbol gene type direction distance location
AMCG00007302 NA coding downstream 281227 10361701 ~ 10372947 (-)
AMCG00007295 NA coding downstream 327353 10320340 ~ 10326821 (-)
AMCG00007297 NA coding downstream 334543 10313591 ~ 10319631 (-)
AMCG00007296 NA coding downstream 394067 10248277 ~ 10260107 (-)
AMCG00007294 sirt3 coding downstream 425472 10219315 ~ 10228702 (-)
AMCG00007309 NA coding upstream 96708 10752238 ~ 10753836 (-)
AMCG00007312 NA coding upstream 1488386 12143916 ~ 12262705 (-)
AMCG00007314 NA coding upstream 1607303 12262833 ~ 12263877 (-)
AMCG00007313 NA coding upstream 1608364 12263894 ~ 12307056 (-)
AMCG00007315 lrrc4c,LOC106573348,LOC107670198 coding upstream 1662301 12317831 ~ 12319714 (-)
G22671 NA non-coding downstream 22240 10628348 ~ 10631934 (-)
G22680 clg19h11orf96 non-coding downstream 41186 10611189 ~ 10612988 (-)
G22660 NA non-coding downstream 75272 10546996 ~ 10578902 (-)
G22619 api5 non-coding downstream 278955 10373739 ~ 10375219 (-)
G22513 NA non-coding downstream 567791 10085760 ~ 10086383 (-)
G22713 NA non-coding upstream 455815 11111345 ~ 11111723 (-)
G22725 LOC103376870 non-coding upstream 609112 11264642 ~ 11282409 (-)
G22732 NA non-coding upstream 708067 11363597 ~ 11412595 (-)
G22739 NA non-coding upstream 885452 11540982 ~ 11541638 (-)
G22744 NA non-coding upstream 940585 11596115 ~ 11596436 (-)
AMCG00007298 NA other downstream 381479 10265045 ~ 10272695 (-)
AMCG00007299 NA other downstream 407428 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 463970 10187308 ~ 10190204 (-)
AMCG00007282 NA other downstream 653009 9960062 ~ 10001165 (-)
AMCG00007267 NA other downstream 1190837 9457488 ~ 9463337 (-)
G22838 NA other upstream 2695987 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3290113 13945643 ~ 13946065 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other upstream 3325844 13981374 ~ 14033212 (-)
AMCG00007366 NA other upstream 5581931 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 5665467 16320997 ~ 16345580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G41570 NA non-coding CI01000006 null 2737136 ~ 2744797 (+)
rainbow trout (Oncorhynchus mykiss) G41982 NA non-coding NC_048565.1 CM023219.2 39100662 ~ 39100869 (+)
tiger barb (Puntius tetrazona) G31983 NA non-coding NC_056703.1 CM032072.1 298474 ~ 299374 (+)