G23379


Basic Information

Item Value
gene id G23379
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16660881 ~ 16662665 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29290
GATCTAGAAACCAGCAGGGTGGGGTCACTCCAGCTCACCTGACACCCCAACATCCACCACTCCCTTGGAATCGTCTTTCATTGTTAGGAGTCCACCAAACCTCAATCACGGGGGTCTTTAAAATGACTGGAGAACTGACAAACTACTGTTCACAATGCAAGAaatgatgttttttgttgttattgttttttttccttctcgtGTAATTTTACTGTGGTGACATTTTTCGGCCTTGTGCCTTGActgattttaaaagtaatgaGGGCACATTACCTCTTTCTTTTGCAAACCTTGTAAAGCCTTCTGAGAAAATGTCAGATGCTTAGACCACTGGCTGCTCAATACCATTTACGACTTTGGAGAAGCAAATGCTAGATAccagtaaaaatgtatacataaatattttaatattattgcaTATACCTGTATGAATTAATTGGAAGAGTCACAAGTGTAATCAAAAAGCTTGTTTTCAAGTAGGGTCTCAAGGCTAATAGCccccaattaaataatataattgcatCTCAGGTTCCTATTTTCTTTCACATCCTGCGTTTGTTTCCTTTCCTAAGTTCTGGAGTTCATTTCTGAATACTTTAAAAAGATGTCGAAGTGTGCAGCTTATCTTCTGTTCTTGAAGACAGATTCtcagtttcactttttttgCTAAAATATGTGCAGCAAATGACACAAGATATATCGAAACAGAGTTATAAGCTTAGATGCAAGCTGATGGCTTTATATTGACCCATAAAGGCAAACCTATGGTTAAGCTATTCAACTTGTCATTTGGGGAATAAAACAGACTGAGTGAAATCCTTCAACTAGGAAAGACCACAGTGATTCTAGGTTTTAGTAGTGTCTTGAAAGCCCTATCTGCATTGGCACAATGGGGAaaagggatttgttttaaaatccagTACAGCTTTTATTCTAAACCAAAAGGCCCCCTGTATTCTGAATACATGTGCAAAAGATCATGAGGAGATGCTTGAGAAACCTAACAAAGAGTTGAAGTTTGCCAACATAACCTCATTATTTTAGGACATTACAGGCTATCTGATTCCTCTtacactttaaacaaacaaattgttaTCAATGTGTAAAATCACTGAGACCCCCTCTTTCTGTAAGCTTCTTGGATATTTCCTGTATTGAGAAGTATAGAGAACGTTCAATAGAGTTAGATATGGCGTACTGGAAATGAAAGTTAAATATCTGATGTAGGCTGGTAAATCTAGCACTCAGTGCATCAGTATTCCCCAAATAGGCAATCTGTTgtgtttgctattttttttgtcaaagaGTGccgtcctctctgtgtccaggcCTGCAATGGCAGTGACTGGGAACTGTCAGGCTGTGTTCACTGAGATATGCCACTTCTTATTCagatctataaaaaaaaaatgtatttaattgtggtTGTAAGTCAACGAACTACACCTTTTAGCTGAGCCAGAAGAAATATGAGCGTGTGCTGTGCTGCCCTTTTAACAGATGCCTTTAAACAGGGAGCTGTGAGTAACAGGGAgacatctttttctttttttttttttcagaccaTGGCTTGAATATATCACAACATTCTGCCTTGTTATCCTGAATATTCACCTGTGTGTATTCTCCTTACTATAATCTAgaacatatgtgtgtgtgtgtgtatatatacatatacacatacatatacatatacatataaaaataaggaCCATATTGTTCCTTACTTGTAGTGAAACTGCATTGAATgtgaattaatcaaaataaaatgcaaatacaatgcaA

Function

NR:

description
PREDICTED: protocadherin Fat 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29290 True 1785 lncRNA 0.37 1 16660881 16662665

Neighbor

gene id symbol gene type direction distance location
AMCG00007373 b4galnt4 coding downstream 193194 16455533 ~ 16467687 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding downstream 216768 16385385 ~ 16444113 (-)
AMCG00007364 phlda2,LOC100705395 coding downstream 390504 16269967 ~ 16270377 (-)
AMCG00007362 ptpn5 coding downstream 672258 15979313 ~ 15988623 (-)
AMCG00007363 LOC108428835 coding downstream 722351 15934147 ~ 15938530 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding upstream 2886 16665551 ~ 16670635 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding upstream 49427 16712092 ~ 16732845 (-)
AMCG00007384 NA coding upstream 308637 16971302 ~ 16978773 (-)
AMCG00007387 tspan18 coding upstream 387051 17049716 ~ 17058918 (-)
AMCG00007386 NA coding upstream 487507 17150172 ~ 17168177 (-)
G23344 NA non-coding downstream 280590 16378518 ~ 16380291 (-)
G23250 NA non-coding downstream 591417 16068083 ~ 16069464 (-)
G23225 LOC103376870 non-coding downstream 859929 15734625 ~ 15800952 (-)
G23105 NA non-coding downstream 1529283 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 1636136 15024241 ~ 15024745 (-)
G23397 NA non-coding upstream 43624 16706289 ~ 16709180 (-)
G23429 NA non-coding upstream 285787 16948452 ~ 16948745 (-)
G23431 NA non-coding upstream 301302 16963967 ~ 16964267 (-)
G23439 LOC106560706,LOC103380370,LOC107104255,LOC105904524 non-coding upstream 330250 16992915 ~ 16993435 (-)
G23440 NA non-coding upstream 347124 17009789 ~ 17010047 (-)
AMCG00007375 NA other downstream 38976 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 315301 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 346849 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2627669 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 2714816 13945643 ~ 13946065 (-)
G23661 NA other upstream 1392805 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1539794 18202459 ~ 18208020 (-)
G23838 NA other upstream 2113695 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 3129036 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 3252481 19915146 ~ 19923153 (-)

Expression


Co-expression Network