G23448


Basic Information

Item Value
gene id G23448
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17032928 ~ 17038985 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29382
tgtatttcattaaatgtatttattttatttttttaaacaaaaggtAATATTGTTTCATCAGTGAAGAATCGTTTCCATGTTTAATGATTgctataaaacatatacattactCAACAATGCAagtatataaacacaatatttcTGCATACAATTCCAGTTGAGCTACCCTCAGAAAATTAAAACGTTACAACTTTCAGGGTACAGACTATGATCATGCAAAAAGATCTGGGCATATGTGTAAGTAACAGATAACAACACagagttgatttaaaaaaacaatacagagaatAACAGAAAATAGACTAATATTACTGAATAGTAGATTCGAATATTAGTTTTTCCCACTAACagtttggaagaaaaacaaaaaacacttaaaccTGTTTTCTCAAAACTTTTTCCTTTTATCTCTTTTAAATACTCTTTTAAATACTGCCCGCTGTTATTCCACACACACTATATTGTTGTGGactaaattactttaaaagagCAGAATAGAGGAAAAAAAGGGATAAAAGACAGAGAAGCCTTTACTGGGAAATACTTTatcaaagaaatgcattttcccatttcaaaatgtaatttctcttaTCCACTCTAATAGTAAAGGCTTAGTTTATGAGACACTTAGcactttatatttgtttaatgcacCTCtaatgtgtgtgaaaacaacagTGGAATGTTCTTACTCTGGGTGAACTGCATTTCATCTGTGACTTCCTTTTATAGAAACGGTTGCTGAGGAATGTCCACACAATAACCCACTGTTGTTATTCTCTATCCGCTTAACCTTCTCGTGATTGCACAAACAGGAAGGCACCAACCACTCCACAGCACTAGGTGGAGCAGTCATGCTGGATTGATAGGTAAGGTAAAGTGATTCCCAAATGAACCTCTTCAGATGCCCCCActataaataacttttaataGGTTTAACTGGCATTAGTGGAAATACTCGTAGTAACATGGTAACTTATATACCTTGAGATGCTTAAGTGGAAGGAGGTGGTGTGGGGGTGCATTGTACTGTACACTGTTACATTTCTATTATAAATGTGGAGAAAACAACAGTGAAATGTAGTAGATTAAGTTATTGGTGTAAGTCTTCATATGTCCATATACTATTAAATGCAAttgtcaaattaatataatttttcatATGATGATtatacatgaaatacatttcacaatttcaatcATTCAAGAATTAATGTTAACTTtttctgcctgttttttttgtgtgttgaaaGTTATTATCAGTTGACAACTTGACATTCAAACTAATTGAATTGAACTACTTAATCAGTAGTGTCAATGAAAGTATCAACATGAGTTGGACAGCTAAACTAGTATTTTCTTTCACTGACATGTTGCGGACCTGCTTAGTGGTAAGGGCTTTTCTTGAAATattctaaaatacaaaatgtttgggGGTAAAACACAAAggtaaaaacaaactaaaataaaaaataaaaagtaaaaaaaaacttgctatTTTGTGGATAGAAATATTTTCAAGTCCGGTTTTTCAGTTGAAATAGCATATCCTAGAAGGAGCTTAAGACATTAAAAGTATTCACTGCAGCACTAAGACATATTACAAAAGAGAAGATAGACCTGAGAGTTTtctgtaaatacagtaaaaatatcaaagtaaaaaattaagaaatgcagATCAGGTCCCAAGAGCATAAATCCCTGGGCAACATTTATGAAAGATTTCAAACAAGCATAACTGCCATCCTTTATTTGTTACTATTTTTTAGGAGGAGTTTTTTCTCCCGTGCCTTTCTGTTTAGGTAttctttctgaaaaaaaatcaattgcaTATACTTGATTTTCAGATCTGAATTATTCCTAAATATTGAATGAGGTGATATGTTCACAATGAAGAAAAATCTTAGCCCAtctgacaaaacatttttgttttttgaaccGATAAAAGATTAGTAACAAGCAACAATGGTTTATTATTTGACCACACACATAAGCATTACTGCTTTTGTTATGTATTGAGAGAGTTCAGCTGGCCCTCGCAAAGTTAGAAAGGCACTTCTGATGTTCtggaaaacatgttaaaaatacatgttttccaaaacaaagtgttattaacattttgtataattaatagTTGTACCACTTTGATAGATTACatgtttaataattgtattttaatgtaacagCTGGAATATGTTTACTGAAAAAAGAGTATGCAAACTTGTACTTGGTTATACATTTGTTATATCAGGCCTTTGAGCTGGTGGTTTACTCAGGATTATACTATTCAGTGTTGAAATATACAGATAGGTGTGATAAAGCTGGTATGATTAGTTGTAACAACATCTAAGAGGTAGCCCTTTTGGATTTTCAACTAATTATAAAGCCTGTCATTatcatacaaaatgtgtacatgtcataaattatattttgcagtAGTACCATATAGAAACACCACACCACAATACAATATGTTGTGATATAGTGTTGTGCTTTTGTCATTTGGCAACTCATTTGTCATGGCTTCCCCTATAACTGCACAGCTGAAATGTTGTTTCCTAGCGTTTTTAGGGTAATCCCTGAAGATACCGCACAAGCCCATCTCAGTTTCTGCCCTCCTGACACAAGCTGTAGACAAATTAAATCATCTGAAGGTCAGAGTTCATTGATGTGAACAGTGAGCAAAACATTGGCCACTATTTTCGTCTGGTGCGGCCTCTCCCttgcactacactgcacaacAGCTGTCTGGCCTCTCTGTTGCTCTTCAGAATCTGTTATTTTTTGTCAGCTACAAACATTAGGGTgtccttattttaaattgaataggTAAATGAGAAATGGTTCTTCAATTAACAAGTTATTACCTATTCAGTATCATTGGGGtgcaattaacaaaataaaaccccacaTTGGACTGAATttcgtattatttttattattattattattattactactcgatttcttagcagacacccttatccagggtgacttacaattgttacaagatatcatattattttttcgTAAGGTCAACAACATatctatattgttttgtaaagctTGTAAAGGCTTGacttaaacaattttaattattccTTCAAGGGACTTCTATGTTTTGAGACCGTGGACGTCAGCTCTGGTCTTGCAGAGCTACATTCAAGCATATTACTTGCCTAAGCTTTAGATATTTGCCTTGTGATTTATGAAACCTGCTGGATATTAGCTTTCCAAAACCAGGGTTGCCCAACTCAACTCATCTAGAGCATTGTGATAAGTGCAAGTTCTGAAAAGTCtctcaacaacaaaaatgactCCTGATGTAGCACTTTTGAAACCTAATCAAATTGATCCTGTCTGCCTGATTACTCTACTCTTAAGATGAGATCATAACTTGATTGTAAATTTTCGCCAAGTAGAAAGGCACATTGCTGTCActacagagagacaggagagttaataaaaagcaaaggtGGGCAATGTTTAGCTAACTAAGGCCATCCATGAACCTGCAGCAGCAGTGACAGAGAAAACAAGTACTGTAAGAATTTGTagctatacacacacaattgcaCATACAGATATAACACCGAATGTACACAGCATCTTTACATAACTCCCATCATGGCTCCCCTGTGCCTCCCTCCCCAAATCCCAAAGATATTTTtgaaagagcaaaataaaataacattacaaagcAGTCATTTTTAAGACAATCCAAACCTTAATATAAACAAAGGCTCTCAGTTGACAAGTTGCCCTCCAAGATTATACAAGCTTTGAACATTGTATCATGTCATGCCTCCTTTCTTTAAGATCTTTACAGTACACATGATTGCTTTGCTAATACGGCTTTGATTAGCTTTTGTTTATCTAAAAGAGATACTAGTTTTGTCAATGACTGATGGCTGGAATTTAAAAAGTATGCAAGCACAAACCCCCATTGACTTTCTATTattgtggatgtgtgtgtagcatttaaaatcaagccCACAGAGTGCAAACTTGTATAAACCTGCTTTCTCTTGAGGTGGTTTGTTGGTGCCCCCTTGGTCTCTGAGCATCATTGTCCAATGCCACAATAGCTTCATCATTAACCTTTTAAATCTGCAGAGTATACCCTTGTGATGGCCAAAGGTTTCATATCCCCCTCCCATTGACTCCTGTTAGAATTCTGCAGGCTATTTTCAGCCCTGCTGCAGCTTAAATTGGAACTGGTATTTTGAGTGGGCGCTAAATCAGGAACAAATGGACAGTGAGATTAAGTGAGCATGACTAATTCTATTGTCTAATTGCCACAGCCAGTgatgggatttaaaaaatacctgCCTTTAAATATGTCCCTGCAAATTCACAGCTTGCCTGCTCCATTTCTCCTCAAGGTTAATAATCACTTTCACTAAAGTGACATTGCTCTTCACTGCAAACATGCaaatatgtcatttttttctttgctaattGCAGTTCAAACCCTCACAGCTGCTACAAACAAAGCAATCAAAACACAGTTGATTTTGCTTGCATACAGACACTGCAGAGGAAGAGGATGTTTTGTAAGCGGAAAGGCTTTTTTGACCAGAGCagcttttggagcttcactttCTCTAGAGGGCTCACATATCTGAGGAATTCCAGTAGTTGTGGCGAAAGGTGTGTGTGAACATGGAGACCAGGATCGCTATAGTACAGTGGATTCTGGATTCTCAGTGTAACAAATAGAGACCTGGTTGACTAGGGTGTCACAATGTGTTATCAGTGCCGTGAGTTATCATTGTACAAGCATAGCAGCAGTGTTGACATCCTTTACCAGCATCCAGTTTTCAGGCCATGTGACATACAAGTTCCCCTACTTTGGGGGAACTCTTAAACGGTCACTTTTCAATCCAGTTAAGCCACTAGAAATAGGGAAGGAGATGTGCAGaggtgaagtgtgtgtgtgtagaggggGGGGTCCAGCTGAAGGCATTCACAGCTGGCATGTGTGCATTACAGTCCTGAAGAGCTCCAGTCCACAACCTGGATCAGCGGTTTACAAAACATTGTGCACCAAAGTTTAGTtccatatttaagaaaataataagtgcTAACCAAACTTCAGATATCTAGTATTATGAATTAAAGGCATAGAGTAAGCAGAAAATACTTACATTgaggtacattttaaaataatgtgggTACAGTCTGCACTGTAATCAGTTCTATTCAAGTAGAAGTCTTACCTTTACTGTACCTCACTTATGTAATGTAACTTACGTTTCCTTTTTACAaagcaattgtttatttttagggctcttctgtgagttttttttctttctttcttgttttggtCTTCTTTATCTTTTAttgactttgttttatttatttttatatttttttatcttgtgtGGCGAATGGCGAGATAGCTTCCGTTGGGTGGGAAGTAAGCTAGTCATAATCAATATTAAAGACTGTAGAAATTCATTCAATGTAAACACATGGCTCTCTCGATACtgaagatgaaaaaatgaaaagaaaaactaacaaaaaaatccccaaaatgGCAGTGTGTTGAAACGGACCAAAAGTACAACAAAAATTAAGTTGAATATAGAAATCATACCATTGTAAagtgcaattatattttaaaaaatgaaaaggctgAGACTCGCCTCAAGATACTGTCTTGAGAGACTGCGTCAATGGTCTCTGAAGCAAGTGCAACTCAGAATAatactagtaaaaaaaaaaaaatagtttcaagATTTCCTTCGTAAGAAAACTGCCACTTCCTCAAGACTGACTGGATAGTCTTCTAACAGCGTCCCGCCATCAAATACCCGAGCGTTACTTGAATCCTGCCACTGCAAGTCACTCCCAGGTAAGTAAATGTCTCTGCAGACTGCGCCTCTCTCTGTCACGGGTGCAACAAGGatctgcaacaaaacaaaacacgcaAATATAACATCAAAACAAGATCAAGTCAAGTGCGCTCACAGTCTTAATGTCAATGAACCAAGATGGATAAAAAAAGGACTTAACCAGCTGGTATCAGTTCATCAAAGAACACTGAAAGCAG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU29382 True 6058 lncRNA 0.36 1 17032928 17038985

Neighbor

gene id symbol gene type direction distance location
AMCG00007384 NA coding downstream 54155 16971302 ~ 16978773 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding downstream 300083 16712092 ~ 16732845 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding downstream 362293 16665551 ~ 16670635 (-)
AMCG00007373 b4galnt4 coding downstream 565241 16455533 ~ 16467687 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding downstream 588815 16385385 ~ 16444113 (-)
AMCG00007387 tspan18 coding upstream 10731 17049716 ~ 17058918 (-)
AMCG00007386 NA coding upstream 111187 17150172 ~ 17168177 (-)
AMCG00007388 NA coding upstream 147853 17186838 ~ 17190438 (-)
AMCG00007389 NA coding upstream 161875 17200860 ~ 17237726 (-)
AMCG00007393 NA coding upstream 288355 17327340 ~ 17348888 (-)
G23447 NA non-coding downstream 1246 17031385 ~ 17031682 (-)
G23442 NA non-coding downstream 16662 17016022 ~ 17016266 (-)
G23441 NA non-coding downstream 17257 17015338 ~ 17015671 (-)
G23440 NA non-coding downstream 22881 17009789 ~ 17010047 (-)
G23439 LOC106560706,LOC103380370,LOC107104255,LOC105904524 non-coding downstream 39493 16992915 ~ 16993435 (-)
G23487 NA non-coding upstream 272984 17311969 ~ 17314094 (-)
G23532 NA non-coding upstream 436233 17475218 ~ 17479751 (-)
G23539 NA non-coding upstream 449135 17488120 ~ 17488416 (-)
G23548 NA non-coding upstream 467524 17506509 ~ 17509199 (-)
G23550 NA non-coding upstream 472539 17511524 ~ 17511794 (-)
AMCG00007375 NA other downstream 411023 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 687348 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 718896 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2999716 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3086863 13945643 ~ 13946065 (-)
G23661 NA other upstream 1016485 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1163474 18202459 ~ 18208020 (-)
G23838 NA other upstream 1737375 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 2752716 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2876161 19915146 ~ 19923153 (-)

Expression


Co-expression Network