G23515


Basic Information

Item Value
gene id G23515
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17474963 ~ 17479749 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29465
ttcactAATGGTCATTTGTTTGGAggtttggggagggggggcagggtACAGTACTTCTACAGTGAAGTCCGCAAGGCCATGTGAAACCTTTGTACAGCAGAAGTGTATTTataagttgttttcttttgtatctTTTGCTTGTTCATGACGTCACCTGTGTTGTGAAGGCCCTGAAGGCATGTCGTCATCGCACTTCAAAGAATTAAGATCCTTAGAACCAaacatatactatactatacagaTCTATATTTCCAGTTCCAGGTTCTTtcttttagttattttgtttaatttgtcatgttttttaatttctcccttttaaagaaaatagcaTATGTGCGTTTGTTACAGACATGCATTTATCAATGAGAAATTCTGCTTTAAGCACAATTGTAGGCCAAGAAGCTTCATGGTAAACTTGACAgaacttcattttatttagcaCATTTCAGtgggaaaagaaaactgaaaatcacctgctagagtttttgttttgactaTCTTTTGTCTAACTCGGTCTACAACAGGATATTGATGAAACCTAGTCTTTATACTTGCTGAAGTAACTCTGGAGCCAGTTTAGTCGTACACTATATACCtcatttagaaattaaaaaggaacaatAACCCTTGTGTTCatcaggtgtttttttgtttttcttgtttcatgATATCCTGTTGAGTGGCCCCTATGAGTTTACAGTGgtttacagtacagtgtctcCTATGAGTTTGTATACACATAGTAAGCATATTCATAAACGTAACATTTTTAGGAAGATTTGACCACTAGATTTTTATCTGTCACTTACTGGAGCCACTGTGTGACTTAGAGAATCAGTTCTGTGCATTGGCAGAGTTGGATGATGATTACAtttagcaacaacaacaaaaacaaaagtcacatAACTGCCCACGAGAAGTTCTGACCAAGACAATACTACATTCTTCTGTAGACCGTTCCAAAGATTCAAAATGTATGGCAGAGTCTCTGTAAAGAATAACCTCACCTAGAACACATATGACCATATTCATTttgttatacttttttaaagCCACAGTTTTATGTGGTTGCCCTTTTACGTTTCAGGGTCTCATCCTTGAGAAAGACCTCCTCCTTTTACCCCCTCAATAGGGATGTGTGACTAGCTGTGCTGCTCTTCAATTACCAAAACCATTTCAAACATAACtactgtaaatatgtatttcatttgaatttgttatgtttttttaatcatatttttatgtgAATATGGAGCTGGCCATTTCTGATGCTTCTCAGTAGACTCGATCTGAAGTCCTTAAATGTTGTATTCAGTTACCAAAACAGTGTGTTTGCTGctactgtacatacataatgATCAgttcaaacaagaaaaaagatcAAAACTCAGATTTTATAACCGtaaataattatacttttttttttttttacaaatcctAAAgtgaattaagttattaatcTTCCATAGCAgattgcaattaaatatatatatttttgtgtagtgcatatacatgtgtatatatatttaaaaaggtttacTTTTGAAGAAATCTTTTTGTAATCAACAtattaccttttttttgtgGCTTTGCTGTAAACTTTGCCTTCATTACTGTTGTTCACAAAGTGCTTATAGTGtaacttttaaaagtaattttaggGATCGAATAAACCCTTTGGCTGGATTGTGACGCCAAGCATTGCTGTCTTTCCCATTAGAGATCACCTTGGAGAAGATGGTTCTGGTGTAAGAATTATGATTTCATAATGGGAGGCTTACTTACTATTGTATTAATTGATGACCAATTCTTGGCATTCAGGCAGCCATAAGGTTTGAATGAAGAACCAAAACCTTCTTcagaatgtgtgtgttatttaataATGCCCGGCATCCCAGCTGTGTGGTTCGTGTTGAATTGCTTTTGTACCAGAATTTCTGCAAATACAATTCCATTCTATTCTCATCACATGAACTCTTCAACCTATGCTGCCCTGTTTCTGTAGATAATATGGTACTCTTTGTGTTTCCCATATTTGCTCCTATCACCTCCTCTTCGATTTAGAAGGTGCTGTTCTTTAATTGTGTTGAGAGGCCTTTTATGGAGTTGCCATTATTCATTCTTTCAGATGACACCCACTGAATATTCACAAGCCAGACCTTTTTTAATACCGATAGCcagttgtctttttaaataaggCTAATTAACTAGACAAACTAGTCCTTTAAGAAAATGTAGGAACTGAATTGGCATAggcatacattaattatttagaactacaaacaatatttaacaaaaaatatatcatttaataaattaaaactaaagatGTCATCAATTAAGACTCTTTCAAATGAATTCTCAAAAACGCaactttcagaaaatgattcTATTTTTAGAGAATATATTTTGTGGACTAAAAGTTTTTctacaaacttttaaaatgtagtacTATCCTAATTTATTACAGCTTAAAAGcagaaatagattttttttttgtccatttaaaCTGTTATAAATTTCAGATATCAAAGAAACTTTAAAACTTTaagatctttttatttttacgaATTGCAAAAACAACTCAAAGTTTGTAAAAGTTGATGCTCAATACTTTGAAAGTCCCAGTGTGTGCACTGAGGTGTGGGAAAACAGATAGGAGACTCTGTTATGAAAGCTGAGAGTGAACTTAAATTTTATCAAATAAATTTATATTCTGCTGGAGTTCTGTTCCTGTTGTCCAatgatttttttatgaattggTGTTCAACCCATAAATGATGGcaaacagaatgtgaaaaatagtttttaacaTACACTTACACTAAGCCAGGCAGCCTAATTGTTAATAAGGCCTCTTATTCTAGCTATAATGTTCTTGTTGCATCCTGTTGTGAAGTTCAGTATCTACAGAAATACCCCAGATTGTCTGCAATTCCATCAACATCCTCTGTATTTACCAGCTTGTTTTGagtgattttatattatagCCATGCTTTTCTTGCCAAACATATTCCTCTATATCCATGCTTGGatctgatgttttattttttaattttaaaaatacttttgtggAATCCAAAAACGCTATTGCACTGTTAATGACTTCAGTGACCTGTAATTTCCAATGGTGTTTATACACTGTAAAGCGACAGATTACAAGATTGTGGCCTGTTCCATTTTTAATGCACAGTGATGtgaacaggaaattaaattgtggttttatttagttttttctgtttgtttaataacTAATTATAGGCATTGTGTTCATCAATGTTCTACATgggatgtttttcattagaCCGCAtggtgattttattattttttttgttttattttatttttttctctcacaatGCTAACTGGTAATTGAATGTGTTTCAATGTCTGTAGCATAACAATGAAGCTATACAGATATGCATGGCATTATATCAATGTTTTTAACTGCATGATCTAGCCTTCAAATGATTGTGTGCTTGGCACTTCCAAGTGCACTTTGAATATCATCAAACAAAGCacttacttttaaatattttaaaggtcACATGCACAGGATGGCTATATGATGTCTGTTTGTATGTATCTACACACACAGCAAGATGTTTAACACAATGATGGCCTTGGCAATGGACATTAGATGCATCTTGTCATCACTGTTAACATGGTGTGCCATTTAACATGCCACAAGCACGTTCTGAAGACCAGAAAGTCTTTGCCAACTTCTCATTTACCACAGCTTTGATGCTTTCTTCCAGTTCTTAATTTCCTGTTGATTTCAGAATTCCGATGTCAATGCATGTTATCTGTGAGTTTTTTATTTATCGACTCTCCATAAGTCTAGCCATACTAAAGTTATTACTTTCAAATGGTTACTATTGTTTCGTAATACTGTCTGCAAGAGCTGGGCAGTTTGTGGTTTGCAAAGCAAAATTACATTTGGAAGTTTTACAAAGTGGTGAgccttttaatttgaattgctttCCGTAATGAATCATTGAGGTTGCTTGTGACAATTAATAAAAGCAGTTAATTGAAGAATGTCATTAGTCCAGAAAAGCCTATCGTAATGCTACTTCTATGgatatttagatttttcctttaatttgcttgaaatgaaaatgcaagtGCAAAGTAACATTGTCATAGTAAAGACTTGACTTAGGAGAAACTAAAAGCATGGGGCTATTTTGGATAGAATATGATGAATCTCGATACCTTACACCAAACCTCACTCCTGctttatgaaaaacattttttgcattttttgtaatatgtaacatcaccaaatttaaataaaacaaatggcagCCATTGTCATAAATTTAAACTGGAATGGTGCCATCCTTTATAACGAGTCGTTTAATGTGGTGTCTTGTGGAGGTGGTCAGTACTTGATTCATCCATACAGTTTTCTGAATTGCATTTCATTGGGTTCAAAGAAGACTGGCTTTACACTTGGTCTTTGCCAGGCCTTTTGTGGCACCTCACAAGAGTTTAGGTAAGGCTAAACCACATCAGCTGTTTGTGAACCTGCAGGAACACACACTGTAGAAATGCCTACAGCAGCATCTCTGTAATCGCAATCGGATACTGCTGGGCCTCAAAGGCACACCACTGGTGCTCCTGTATTTCCATTATGACTAACACTTGTCTGGATTACCAGCTTGACACTTACTCatgtatctgtttttgttttgtatttttttttgccttgGATTTCATGTATAAAAGCCTTGTAAAGCCTACCCTTATGACTTTTGTCAAGTTTTGTATGATAGCAatgt

Function

GO:

id name namespace
GO:0016458 gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29465 True 4787 lncRNA 0.34 1 17474963 17479749

Neighbor

gene id symbol gene type direction distance location
AMCG00007398 lrp5,LOC106560964,LOC106573620 coding upstream 85 17458080 ~ 17474878 (+)
AMCG00007397 lrp5,LOC106573620,LOC106560964,LOC107720507 coding upstream 31756 17424426 ~ 17443207 (+)
AMCG00007394 NA coding upstream 63595 17387943 ~ 17411368 (+)
AMCG00007390 NA coding upstream 164397 17304521 ~ 17310566 (+)
AMCG00007391 NA coding upstream 188771 17282560 ~ 17286192 (+)
AMCG00007396 ppp6r3,LOC107714032 coding downstream 12760 17492509 ~ 17510962 (+)
AMCG00007395 NA coding downstream 81229 17560978 ~ 17571550 (+)
AMCG00007400 NA coding downstream 98510 17578259 ~ 17583440 (+)
AMCG00007402 LOC105013640 coding downstream 171882 17651631 ~ 17652812 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding downstream 179933 17659682 ~ 17675554 (+)
G23497 NA non-coding upstream 122173 17352572 ~ 17352790 (+)
G23449 NA non-coding upstream 426645 17047930 ~ 17048318 (+)
G23433 igf2b,igf2,LOC105904486 non-coding upstream 501544 16969805 ~ 16973419 (+)
G23432 NA non-coding upstream 506895 16967862 ~ 16968068 (+)
G23322 NA non-coding upstream 1063752 16356690 ~ 16411211 (+)
G23538 NA non-coding downstream 7368 17487117 ~ 17487400 (+)
G23540 NA non-coding downstream 11696 17491445 ~ 17491761 (+)
G23610 NA non-coding downstream 341098 17820847 ~ 17821117 (+)
G23604 NA non-coding downstream 342017 17821766 ~ 17823337 (+)
G23628 NA non-coding downstream 424809 17904558 ~ 17904949 (+)
AMCG00007379 NA other upstream 812263 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2094998 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2187003 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 2985271 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 6861859 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 718869 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 727329 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 737981 18217730 ~ 18224936 (+)
G23724 NA other downstream 810359 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 1087493 18567242 ~ 18570472 (+)

Expression


Co-expression Network