G23548


Basic Information

Item Value
gene id G23548
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17506509 ~ 17509199 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29504
CACTGATTCGATGAGAACAATATTCCTCCCCACTGTCTCATGTCATGACTTACTTGGCTTCTTCCATTGCGGTTACTTCATCAAGGGGACCATTTAAAGTTTCATTTGAtggagattttgttttctcttctaaGTGCTTTAAACTGCCGAGAGAAAAAGACTCATAAGGAGATGATCTTAAAACTCTGCTGAAGGATTACACTGATGCAATGCAATATAAAAGTCACTGCATCCACTTTAAGCATGAATATTCTAATTCTAAAAGCATTATGTAAGCTTTTTGAAAACTTGTgccttcagaaatgtttttattcagtttgtgcaTTTAGTTAAAAATAGGATTTCTTAAAAAGAGGGGAAACTTAAGCACAACCATGATACCAAAATGCACTGATTGTGTCCTGAATCAAAGCAGTATAAAACACAGCCAGCAGAGTGAGCAGTCTGTGCCTCTAAATCTTCACTTGATTCGGCACCTAAATGCTTTCTGTGTATGAATACTGTGCAGTTAGTGAATATTTTAAGAGTAGAGAATTAGACCATTTACTGCTTGATGGATTCTTGGATACCTTGGTTTCTGACAGTTGCTGGCAGGTTGTGGAGAAGTAGGAGAACTCTTCTCAGCCTCTGCACTGTCTGTTACTGCATATTTCACAGAGACTTCTTCAGAGGTAGACACTTTTTCTTCCTCGCtagaaaacaatattacaattaGTGTTACAGTTAAGCtgaagatttgttttggtttaaaagGATGTATTTTTGATACATAACAGACACATGCAAAATGGAAATCAAGGACCACATTAGTGCAACAGcatggtataaaaaaaaaatgttgactgCATTCAGAAGTGACTAGAAAGTGCTTTgacacatacaataaataaccaGGTGCAAATAAAAATCTGGTCAAGCTCATCTAATGAGCCAGCACATTTTGGCTTGTCACCACCCACTTCAGATTAACAAATGCTTGCTTTAAGATCAGCCTTATATAGGAGAGTTGAAAGTTTAAACTTCAACATTTGAAACTCATTTTAGTTCTAAAGTGTAATTGAAAATCTGAATACCTTCAGTCAACCAAGACTTTTCAAGTTTCCTTTCCATAACCAACAAAACTTGCATAcagcaaatggaaaaaataaactgcaaaggCTTCAGTTACAAAAACACTGAGATTGCTTGTTTTAGATGCAAACTAAAGGAAATAAGCAATACATTACATCAGTTATCCAAAACCAGactaagcaaaataaaatggggCATAAAAACTTGCAATGTTTTATCTAAGGAATTAATTTGACGAGATAACCACTATAAAGCTAGTattaaacatttagtttaaatgtataaaaggttaaaaatttaaatttatattgaACCCTAAAGCCCTTATACCAAAATAGTCTGTTAAAGTGGTCCATActcaaaaaaacattgaataaaaGTAGTGAAGTTCATGTGTACATTCTTTTCCCTTTGGGAGGGTACCTGTTGCCAAGTTAACCCAAGAATGAATGGGAGGgtttatgaaatataaatacccTACACATTTATAGCAGGATCACATTCCTTAACAAATGCGATTCCTTTATCCATATCAACTGTAACCTGGTAACAATACTGTCCCATACCAAACTGTGGCTACAAGTAGGATAAAATGGCCACTTTCAGAGTATATTCATGGGACCATATCGATTACAGACAATAGCTCTATCTAGCCACcaggaataaagaaaaaagggaaggaaaaacaaatgctgaagGAGCAGTTGGGGTCCCACTTAGCATCACTTAACACCTCCCTTAAGTACAGGTATATTAATAGgaaaaactcaaaaacaaaactaccatATCCCCATCTTGACATATATAATCTGAAGTAAACATGCAAATGGTGATGACAAATCGAAGTGTCGGACATggaaacacatacacagcatAAGCGTCCCTTGTTTGCTGTACATACCGATAGGATTTCAACACTCTGAAGCCACACGCACgccTTTTGAAAACAGCAGTTTCAGTTTTGGCATCTACAGTAAGGCTGACCGTCTCCTTCATCGAGCCATTGGTGACAGTCTCCGTTATTCTGTCAGCTGTGgggtcctcttcctcctcaccCTCACAGCTTCCCTCCCCCTTCGCCCTGGGAAATACTTGAGGACTGGCGCACTCCTCCGGCCACTGCTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29504 True 2199 lncRNA 0.37 2 17506509 17509199

Neighbor

gene id symbol gene type direction distance location
AMCG00007392 kmt5b,LOC102794872 coding downstream 135253 17353112 ~ 17371256 (-)
AMCG00007393 NA coding downstream 157621 17327340 ~ 17348888 (-)
AMCG00007389 NA coding downstream 268783 17200860 ~ 17237726 (-)
AMCG00007388 NA coding downstream 316071 17186838 ~ 17190438 (-)
AMCG00007386 NA coding downstream 338332 17150172 ~ 17168177 (-)
AMCG00007399 NA coding upstream 12590 17521789 ~ 17530599 (-)
AMCG00007401 NA coding upstream 83102 17592301 ~ 17648772 (-)
AMCG00007405 NA coding upstream 314695 17823894 ~ 17848724 (-)
AMCG00007406 kif23,LOC107686310 coding upstream 434572 17943771 ~ 17958062 (-)
AMCG00007411 NA coding upstream 453522 17962721 ~ 17978522 (-)
G23539 NA non-coding downstream 18093 17488120 ~ 17488416 (-)
G23532 NA non-coding downstream 26758 17475218 ~ 17479751 (-)
G23487 NA non-coding downstream 192415 17311969 ~ 17314094 (-)
G23448 NA non-coding downstream 467524 17032928 ~ 17038985 (-)
G23447 NA non-coding downstream 474827 17031385 ~ 17031682 (-)
G23550 NA non-coding upstream 2325 17511524 ~ 17511794 (-)
G23566 NA non-coding upstream 72407 17581606 ~ 17583440 (-)
G23580 NA non-coding upstream 149153 17658352 ~ 17658558 (-)
G23620 NA non-coding upstream 265352 17774551 ~ 17774846 (-)
G23624 NA non-coding upstream 312568 17821767 ~ 17823318 (-)
AMCG00007375 NA other downstream 884604 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1160929 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1192477 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 3473297 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3560444 13945643 ~ 13946065 (-)
G23661 NA other upstream 546271 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 693260 18202459 ~ 18208020 (-)
G23838 NA other upstream 1267161 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 2282502 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2405947 19915146 ~ 19923153 (-)

Expression


Co-expression Network