G23886


Basic Information

Item Value
gene id G23886
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19080082 ~ 19083613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29902
GGTCTGCAGGAGGGTGTCCTTTCCCCTTTGTCAAAGTGCATGCTGAGGGCTGGATCACACTGTCAAAGAGCTTTGTCCACACCAGCGCCCAGGGGCTCAGGGAGCTGCTTCTCTTCCTAATGGCACAGTGGACAACGCTTGAAATTCCCTGAGGAGTTGATCAGCAGGCTCAGGTAGGTGTAGCTGGTTGAGGTCTCTGTGATGGTGCTGGTTAGAGTGAACTAGTATTTTCCGTTTTGGATTCTGGACGATCAGGACGGTGGTTTCCTCCATGCCGAGCTCCAGGGCCCAGGCTCTGCCGCAGCGGTGCAGCCTGTCCAGATGTTGCGGGAGCCCCAACAGGAGCGCCAGGTGGTCAGCATGCAGCAGGCACTTGACCTGGGTGTcatcctctgtctctctcgctcaaACACCATTGGAATCATTTAATTATcagaatatttaattgattcGCCCCTGTGGAAAAAAAGTCAAGCTACACCATTGTTAATACTAATATTAGTATTGGGGTAACAGTTTGGATTAGTGGTTAGGGCTCGTGTGTGGACTGTGGGGTTCAATAGCTGGTGGGGACACTGTTGTTGTACCTTTGCATAAGGTAATTTACCTGAAACGATCCAGTAAAAAAACAtccatgtataaaataatgtgatatatttgaACAATTGTAAGTCCccatggataagggtgtctgctaagaaaataaatacacattctaATGACTGTAGGTGCATGCTGTGTGTTAGACACTCTCCCTGGATGTTGAGCAGGTTTTGAACAGCAGTACAATCACCCCCAGACAATACATGGGGAAATGAAAGCATGCAGTGTGTGTTCTAGCGGTTGTCAGGTACCTGCTAACACGGGTACGGCACACTGGTGACTCATCTCCATCTTCAGTGAGGGGAAGTGACAGCAGCAGACAAGGCGGCTCTCCGGACCCGGCCATCGATACTCCTGTTGGTTTCCCGGAGTTCTATGTTATATGTGAAAAAGTCCCTCTTGGTGTCAATGACACCTCTTGTGCTGCCCAACACCTTTGCACAAATGTTAAGAGTattgagtgacagtgtgagtAATAATTTAACACAGCCATACAATGTCATGCAAAAACAAGGATGGAATAATTCCACGGGTGGGATATTTCCACATACAGGAACCAACAGGACACAAAAAGCATATGCAACCCAGAATGGTCATACAGGTTCAAAAGGTGTCACTGGGAACTAAAGACAACATGCTAGGGGACAAAATGTGTAGTAGCAGACAGCCAAAGAACATCACTATTATTGCATGGTTAGTTGTTTCAAGTAATTATGTACCTATAGAAGTCAATTTTTAACCTATTCTGCTACCCTAGAGAAGCCTAATATATTGTACTaaaatacactgtactgtaatacactgcTGTCCTATGATAGGCTGTAATACACTCTggtgcactgtactgtaacacaaTGAAGACTGTTACAGAGTACAGTGCTGTATTATACGGTATGTCAAAAGAACAAGCAACCATGTGACCTACTGCGTACACCGCTGAATCACTGTGAAGTTTCGTCTGCCGGGCGTAAAAGCTGCGGGAAGAGCTCGTGATTGAATAACAATAACAGCTAGTGTTATATTACTgggtatgtattattttatggtagcatgcaggttaatatcagtgatcGTTTGTAATATTGTTAATAGCAGAATTTAGGTTAGTTAGGAAGTAGCATGTAACAGTAAGTAGGGCAGTAGCTGAACTATAATAGTAGTTCATGATCGTATGTACAGAAAGGtggcaaattaaaggaaaaaacaacaaagtggctcagtaaggtgttgggcaccacgagccgccggaacagcttcaatgctgttggcacagattctacgagtctgaactctactggagggatggaaaaacattcttccaaaagatattccctcatttggtgttttgatgatggtagtggagaatctcccataggtgttcaattgggttgagatctggtgactgcaaaggccgtAGCATATAATtaacatcattttcatactcaaatGATTCAgtccttgtgccctgtggatggctCATTGTCATCCTGAAAGAGACCTCTCTCATTAGgctagaaatgtttcaccataggatagaGGTAATCACTCAGCATTactctgtaatgatttgcagtgacccttccctctaaggggacaagtggacccaaactatgccaggaaaatgccccccacagcataacagatcccccagaccccctcactgtaggggtccagcagtcaggcctgtaacGTTCTCTTGgcgtcgccacacatgcactcgcacACTTAAGAACACAggtgagcgtctttgtgactgaagctcctgccatttgtacCCCAATAATGAcacctctttcaaagtcacttcgATTCTTTCCTCTTGCTCCAAAAttaaggtcaactgggcctgctcagcattctTATACATGCtgacagagcatgataggatgtaaattgcttaattggatcatgcagtacacctgtttggaggcatctgcattaattgttcctccactcatttgtttttttgcctttcATGTCACGTCTATAAGgatacacattttcattattgatcatacaatggaaatagccTGAGAAATGCAAGGGTTTGTACATCATAACCCCATTGTAACACACAAAAAGGAGTCcaataaggaaaatacaaaGTGGGGTTGTAGGCTAAATATCATAATCATGGTAAAAATGCAGTAATGGGGCCTTGTCTGTAGTATGGTTAACATGGTAATGTATAGTATACCATGGTAAAAATATGGTCTTTGGATTTTATCCCATGTCTTCCAGCTAAACCAGTGTTTCTTACAATGTTAAAGGATGTTCAGAAGTGTCTTATGGTTTTACTTTGAAggaaattgtacattttcttaagcGGGCTGTATAGAATAAACACGTCAGAAGAGCCTTCTCTAGCATATTTCTTCATGCTGTGGTTCACatttttgaattgtgtttaCCAGCACTGTTGAAGACCATTATGGATCTATGCTAACAAAGACACTTCAAAGACTTTGCGGTTTTAAAGAATCAGGATTGAATCAAAGTAGATCGTCAATTCCTAAATCAGGAAAGTACTTCCAAATTGCTCAAATTTGGAGAACTGCTCATAAAGTTTTAAGTCGATCCATAAGTGCAACACCTAGTAACTAAATCAAGATTCTGTGCTGCACGctcaaaattaacatttatatatatataaaaaaaaaaaaaaaagaacttgtaAGTTTTTATCTAGTATCCTACCTGTGGATGTGTCAATTGCCATCTATACAAATTTCTGCAACTTTGACTCAAACCCACAAGTGTGCCATAACCTATCGGGTATCGGGCACTTGCAGTATAGGCAACATTATCCATTTCCTTCAACAATTCATAGGATCAATGAACCCAACCTCCCCAAGCACAGAGTAACCAGTCACCACACGTGAAATTGAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29902 True 3496 lncRNA 0.42 2 19080082 19083613

Neighbor

gene id symbol gene type direction distance location
AMCG00007453 NA coding upstream 32323 19032084 ~ 19047759 (+)
AMCG00007451 LOC107755062,LOC107700450 coding upstream 107878 18939265 ~ 18972204 (+)
AMCG00007450 NA coding upstream 183453 18875555 ~ 18896629 (+)
AMCG00007447 vwa9,LOC107583765 coding upstream 265154 18810855 ~ 18814928 (+)
AMCG00007446 LOC101468289,LOC102208128,LOC106924056 coding upstream 289994 18750470 ~ 18790088 (+)
AMCG00007458 LOC107712499,LOC106561775 coding downstream 59520 19143133 ~ 19167032 (+)
AMCG00007464 NA coding downstream 96182 19179795 ~ 19182234 (+)
AMCG00007466 NA coding downstream 107133 19190746 ~ 19194345 (+)
AMCG00007465 NA coding downstream 135177 19218790 ~ 19236741 (+)
AMCG00007467 NA coding downstream 219496 19303109 ~ 19338989 (+)
G23804 NA non-coding upstream 360288 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 455023 18623921 ~ 18625059 (+)
G23782 NA non-coding upstream 491014 18588866 ~ 18589068 (+)
G23781 NA non-coding upstream 491392 18588016 ~ 18588690 (+)
G23780 NA non-coding upstream 493546 18586174 ~ 18586536 (+)
G24030 NA non-coding downstream 545691 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 567043 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 715872 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 719240 19802853 ~ 19803466 (+)
G24088 NA non-coding downstream 732182 19815795 ~ 19818345 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 23949 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 65183 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 509610 18567242 ~ 18570472 (+)
G23724 NA other upstream 787744 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 855146 18217730 ~ 18224936 (+)
AMCG00007483 NA other downstream 855557 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1976546 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3047960 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 3105632 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 3179907 22263520 ~ 22266409 (+)

Expression


Co-expression Network