G23887


Basic Information

Item Value
gene id G23887
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19004347 ~ 19087472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29903
tctgtgtgtgtgtgtgtgtgtgtgtgtgggggggggtttacaGCGCAGCTTCTTGGCCACAAGGAAGTGAagattttgctttgtttttgcatatttgGAGAGTGAGGGAAAggaacagtatatatatattacacacacacacatacatttaaaaaaagacccCCCCGCCCCAAAAAATGAATAgctttaaatcaaaatgatgaAGCCTCACTTGGTTCCTGCactggtgtgagtgtgtgtatagaaCATGGGGGATTTGTGGTCAGGCCTTTCCTGTACCACTGTGCCCTCTCCACATCCACTGATCAATGGTACACAAGAGTGGCACATACGCACAGGACAGAACAGCGGACCATTACAGGCCCGGTTCAGACTCTGATTGACAGGTAAGGGGCAAATCGCATCTCTTACTACCACTGACATCTGTAGCAACAGGGAGGGTTCAATAATTGAGTCTAAGAGCTGCCTGTTGACATGACACGGACAGTGCAGACAGCAGCACGACAGCCTGGTTCACTGGCACCCGACACCCTCGCTCTACATTCACTGGGGGAGAGAAAATGGGGAtggaggggaaataaaaaaaataaataaataaaaaactcatAACAGTCCAGTCCCTTCAGCATGTAAATGCAGTCAAAGGAGGCAATGCCTGGACTACCATCTTTAAATTCTTCCTTTCTCACATAGTCCTGGAACCGTTAGGCAACACTGAAGGGGGACACACGAGAAGTCCAAAGGACAGCACAGTCTTCAATCTTCTTCCTAACCGAGTAGAGAGCTGTAGGCTAAAGAGGTACTCTACACTTGAGTTTCAACTGCACCAGAACAAAGgccttaaaacaaaacaaatgaaaacacagaagatGGGTTTAAACCACAGTGATGAAGCCTGCTTTGCTGGTGCTACAAAAACGCCTGCCTTAGAAAGTAACAGCTCCTCCATCGTGCTCACACAGCCAGAAGGCAGAGGTAAGAGCTGACAAAGCCTTGCTACATTTAGGTTTTTAtaatacttgttttaaaaacacacaaaaaaagtatatGGGTCAACATCTTCTGCATTTACTCCCCAGTTCCGGTACCTGCAAGCAAAATATAGtttccatttatatataaaaaagaaaaccttctgtggaccccccccccccacacacacacactacagataGGAAAAGAAACAGGCAGTGCCTGCACAGAGAATTTCCAGGTGCATTTAAAACCTCTTGGTAGAGaatttgtatatatagatattcaaaataaactggAGCATTAATGTTTGATCAGCCTGTCCATGATTGAGCTGCGGCTAATAGAAGGGGGGCGTACAACGTGTCAATCGCACACTGTGTCTTCAAATTTGAATCTGTGCAAAATCAGGCGACATGGTgaacaggaggaggagggatggTAAAGTGAAGCGTCGAAGAAACGCAGCCGAGATGAGCCAAAGCAGGTTGAAAACGTACAAgtttgtaaaaactaaaaacacgtAGATGGAACATGTTAGGACGAGTGGCAAAGAAACAAGAACGGGAGGCAAGCACATCCACGGCGCTCAGTCTTGTGGTGCTTGTTGCTGCTACAAATGTTACTGTACGAAATGGGTCGTCACACAACATTCAAGCTCTGGCatttaaaatcctttaaaaagGGAGAAAGCAGGGGGCTGGGATGGTGCTTCTTGGCCCAGTAGACATAAGCAATTACTATGGTCTAAACACCCCactgtcccccccaccccaccctgaTAATGACCGTCTCCAATCATGATTTTTATAgaactggttttgttttttttaactacagtggaatatttaattacagaaaccatataaatgcatgttttatgaaCTGACCGACTAAAActagatttttcatttttttaaacaaatatacaaaatgcagGCAGACAAAGCAGGAAAACagccattaaaatacataatgaggataggggggagaaaaaaaaaaaaaagtgactaTTACCAGAGTATCTATGAGACTGCCTCAACTAATAAGGAATGCAtaatgaaagtctacactaGAGTAagtaaaaagtttaaaaacctgaacagaagagaaaattaaaaaatatatattttttactggCCATTCCTGTTGAATCGAGAGCCTGGAGTCAGCAAGTGGCAACAGTCCCACGTGGAGCACCAAAAAGTTTGTGTCCTTTATCTTCTTTGCAACGACATCTTCAGTTAATACAGGCTGAAACTGCTGCTGGCAAAAACCGAACACTTCTGAAACAGTCCATGTGACGCGGAGAGAGAAAGTAAcgatcaaaaataaaatcatgaaattCACTCAAGAAAGCCTGTCAATGGATCCACCCTGGTCTTGCCTACAGTATGCATggagtatatttatatatatatttataaattctaTAATCAGGAGATCAGTTGCTTCAAAAACCTTGGAAGGGTTTTGACTTTTTCCTCCCCTCGTTACCAgatctcaaaaaaaaaaaaaaaaaaaaaaaaaaccttaaaagcaaaatgtggggttaaaattaaatttaaaaattcaaCAGTAATGGCAACACTTTTTAGTTGTAATCCAAAAGGGTTCTGCGTGTCTTTTctggttggttggtttgtttttcgcTTTACTTCCGTTGTTTCCTCTCCATTTGTTTAGGCCATGCCTGCCCTCCCTGCCCGGGGCTTCAGTCTGGGGGCAGCAAGTCGTGCAGGCGAAACCGCTCCCGGATATGAGGTCTCACGTCCTCGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29903 True 2753 lncRNA 0.42 2 19004347 19087472

Neighbor

gene id symbol gene type direction distance location
AMCG00007451 LOC107755062,LOC107700450 coding upstream 32143 18939265 ~ 18972204 (+)
AMCG00007450 NA coding upstream 107718 18875555 ~ 18896629 (+)
AMCG00007447 vwa9,LOC107583765 coding upstream 189419 18810855 ~ 18814928 (+)
AMCG00007446 LOC101468289,LOC102208128,LOC106924056 coding upstream 214259 18750470 ~ 18790088 (+)
AMCG00007444 NA coding upstream 292101 18690011 ~ 18712246 (+)
AMCG00007458 LOC107712499,LOC106561775 coding downstream 55661 19143133 ~ 19167032 (+)
AMCG00007464 NA coding downstream 92323 19179795 ~ 19182234 (+)
AMCG00007466 NA coding downstream 103274 19190746 ~ 19194345 (+)
AMCG00007465 NA coding downstream 131318 19218790 ~ 19236741 (+)
AMCG00007467 NA coding downstream 215637 19303109 ~ 19338989 (+)
G23804 NA non-coding upstream 284553 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 379288 18623921 ~ 18625059 (+)
G23782 NA non-coding upstream 415279 18588866 ~ 18589068 (+)
G23781 NA non-coding upstream 415657 18588016 ~ 18588690 (+)
G23780 NA non-coding upstream 417811 18586174 ~ 18586536 (+)
G24030 NA non-coding downstream 541832 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 563184 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 712013 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 715381 19802853 ~ 19803466 (+)
G24088 NA non-coding downstream 728323 19815795 ~ 19818345 (+)
AMCG00007433 NA other upstream 433875 18567242 ~ 18570472 (+)
G23724 NA other upstream 712009 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 779411 18217730 ~ 18224936 (+)
G23698 fem1b other upstream 796039 18207078 ~ 18208308 (+)
AMCG00007417 NA other upstream 802387 18198618 ~ 18201960 (+)
AMCG00007483 NA other downstream 851698 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1972687 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3044101 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 3101773 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 3176048 22263520 ~ 22266409 (+)

Expression


Co-expression Network