G23893 (eif3j,eif3ja,LOC107688938,LOC107712512)


Basic Information

Item Value
gene id G23893
gene name eif3j,eif3ja,LOC107688938,LOC107712512
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19050977 ~ 19056133 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29919
tctgtttttcgGTTAATAGAACTGTCAAGGAGGTGCTGATTTTTTTCATGTCTTCCACTTCCAATGAAATACAGAGATCTCGGAACAAAGACTCCAGAAAACTGGAATAGTGCACGGACTTCTCGTACTGGGAGATCTTTTCCTTTAGCAGCTTTTCAAATTCTGTGAAGTCATCTTTAGAAGAAGGATTCATGGCATCAATTCCTGTTACATTATTTACACCTGCAGggatcaaagaaaaacaaaaagcatgacattgttTGCAATCACCGAGAGACAGGTGTA
>TU29920
CAACCACCTAAAAACAGGAGCCAGGGACCCGAGCAGCGGCAGGAACTTACATGAAATACAGAGATCTCGGAACAAAGACTCCAGAAAACTGGAATAGTGCACGGACTTCTCGTACTGGGAGATCTTTTCCTTTAGCAGCTTTTCAAATTCTGTGAAGTCATCTTTAGAAGAAGGATTCATGGCATCAATTCCTGTTACATTATTTACACCGAAGGCTTCTTTTGCTAGTTCAAGGTCTGCTTCTTCTTGCAACTGTTTCACTCGCAGCTTCTCTGCCATCTGTTGTTCTACTGTCAGTTCTGCCTCGGATTCCTCTAACCTCTTTTTGATTTCCTCCTGCTTTTTCCTCTGTCGGGTCTCCTTCTCTTTGatcttttcaattaattttttcTTGTCTGAAACTTTAACGTctgtttttttctcctctgcCTTCTTCTCCTCATCTTCGTCATCATCCCAATTGTCCTTCACGTCTTCCTCCTCGTCCTCGCCTTCCCACTTGTCCAACACGGGCACTTTCTTGATCGGCTCATCCTGCTCCTCGAAGTTGTCGGCGTCCCAGGAGTCGACGTCCG

Function

symbol description
eif3ja Predicted to enable translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human EIF3J (eukaryotic translation initiation factor 3 subunit J).
eif3j Enables identical protein binding activity. Predicted to be involved in translational initiation. Located in cytosol. Part of eukaryotic translation initiation factor 3 complex.

NR:

description
eukaryotic translation initiation factor 3 subunit J-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29919 False 285 lncRNA 0.39 2 19050977 19051613
TU29920 True 575 TUCP 0.46 6 19051342 19056133

Neighbor

gene id symbol gene type direction distance location
AMCG00007453 NA coding upstream 3218 19032084 ~ 19047759 (+)
AMCG00007451 LOC107755062,LOC107700450 coding upstream 78773 18939265 ~ 18972204 (+)
AMCG00007450 NA coding upstream 154348 18875555 ~ 18896629 (+)
AMCG00007447 vwa9,LOC107583765 coding upstream 236049 18810855 ~ 18814928 (+)
AMCG00007446 LOC101468289,LOC102208128,LOC106924056 coding upstream 260889 18750470 ~ 18790088 (+)
AMCG00007458 LOC107712499,LOC106561775 coding downstream 87000 19143133 ~ 19167032 (+)
AMCG00007464 NA coding downstream 123662 19179795 ~ 19182234 (+)
AMCG00007466 NA coding downstream 134613 19190746 ~ 19194345 (+)
AMCG00007465 NA coding downstream 162657 19218790 ~ 19236741 (+)
AMCG00007467 NA coding downstream 246976 19303109 ~ 19338989 (+)
G23804 NA non-coding upstream 331183 18714671 ~ 18719794 (+)
G23791 NA non-coding upstream 425918 18623921 ~ 18625059 (+)
G23782 NA non-coding upstream 461909 18588866 ~ 18589068 (+)
G23781 NA non-coding upstream 462287 18588016 ~ 18588690 (+)
G23780 NA non-coding upstream 464441 18586174 ~ 18586536 (+)
G23886 NA non-coding downstream 23949 19080082 ~ 19083613 (+)
G24030 NA non-coding downstream 573171 19629304 ~ 19630607 (+)
G24040 NA non-coding downstream 594523 19650656 ~ 19650874 (+)
G24083 NA non-coding downstream 743352 19799485 ~ 19799952 (+)
G24085 NA non-coding downstream 746720 19802853 ~ 19803466 (+)
AMCG00007452 NA other upstream 36078 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 480505 18567242 ~ 18570472 (+)
G23724 NA other upstream 758639 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 826041 18217730 ~ 18224936 (+)
G23698 fem1b other upstream 842669 18207078 ~ 18208308 (+)
AMCG00007483 NA other downstream 883037 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 2004026 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 3075440 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 3133112 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 3207387 22263520 ~ 22266409 (+)

Expression


Co-expression Network