G24088


Basic Information

Item Value
gene id G24088
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19815795 ~ 19818345 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30172
CTTCAAACCTGTTGGTGATGTGTTAGAGAAATCATTGCAGAGCTGCAGCTATAGCCTGTTTGGTCATATCACCCTAAAGAACAtagattagtattattattattattgatcatgtACTTCATATTGAAGCAGCGAAATGCAAAGCCAtccttgtttgtgtgtttgaatgcCATGTAAACTATTTACCTTCCACGCCAGCAGAAGGACATTCATGATGGCAAGTAGGGGACACGGCCCGTTCTCGTTCTGGGTGATGATGGGGGTGCTCTCCTCTTTCCACTTGATCCACTTGATGTGGTAGACGGACTGGCCGGCGCCGCGGTCCTTGACGGGGACGGCGAGTTGGGCACCCCCGGCTCCGAGCTCGTCGCTCTGCAGGGCGCTGGCCAGCACCCTGTCCTCGGCCCCCTCGCTGGTCAGGTCGGAGCTGGGGCAGGAGTGCAGGTTGGAGAAGGACTCCAGGGAGTCGATGCTGCGCGATTCCCCGGCCGGGCTGGGGTCACTGCCGCTCGGATCCTCGCTCAGATGCTCACTGGAAACTAACCCTATGGAGCTCAGACTTATTTTGTCCGTGTAGAGCATGGTGGGAGGGGAGAGCTTTTGCTGCCCGGGCGATGCACACTCCTGGACGTCTGCAATGCCAATCGCGGCTGTGCTTTTTGCAGAAGAAGGAGGTCCACCCGCTTTGTTGTTGACCAACTTTGTTGTAGTACCACTAACCTCACCATCACCGCCGCCGTTGGGTCCCGAGCACTGGCTGTGTCCCGTCCCATTGCTGAGCTGCTCGGTGCTCCCCTCCCCGAGGCTGGACTGGACCGGGCTGCTCCCAGCCGGCAGAGATCCGCAATTTTCCCGACTATCGTCAGATTTCTGATAACCCGAGGGATCAACACTGGCAGTGTCTGTTGTTGTAGTACTACTAGTACAACCTAAAGTACTgagaggagcagcagcagtaatgGTCTTGCAGCTCTCGCCTCCGCTTTTCAGACAACTGGGCGCTTTATCATCGGCCATTTCCCTTGTTTTGGCAGAACAGGGAGCACCTCCTCCGATATCCATATGGAGGTTTGCATTTTTCTCCATTTCGGCTCCCACTAACGCCTAGTCTTTATCAGGCTTGCAGCTCCAGCTCCTGCTCCAAAGACGCCATGACATCTCTCTACCTCTCTGACGTCACGGCTGGAGGGACGCCTCTCTTCAGGTCACGGAAGGGCGATAGTAATATAATGTGGATCTCAATTTGACGCGGCTCTTCATAAAGgggtttatttgcattttaaatattaataaatacacgtaAATAATCAAATCTATTAgcttaatcatttattttcattattctttATAAAGTTTTGGGAACAAAAAGCTTTTACACATTCAACGATATTGTTGCATTATAACAATACATCTTCCTTcgaaacaaaaacagtttgatTGTCTGTGAGAGTGTTTTATTACGACCACGAAGTCAgatcccctccccccaccaaaatccataaatactgtataaagaaagacagaaaacatcAAAGCTTAGTTGCCCATGTTTTATCAACAGGAAGTGCTACTTCTGACACGACGCCTGCGTAGAAGACAGCCGAATGTTCTTAAAGGCGCAGTGACTTAGAAATGCTGGCGTAACAATACACCCATTCGCACGACAAATGTTGTTTATACAGCATTCAGTGATGAAtcgttatgtatttatttttctttgtttgtgattatttttgttttttgttcaaatacaaatatatatcatCTTAAATTGATTAGGAGGTTATGGTATACTGTAAATAATGGtcaaattgcatgtttttttaactacCACGCCCAtgtttgatttatattaaaatgtagtgCATGCAACGTGTTCATGGATAGGCAGTGAGATGTTTTGCTCATGTTCTATGGGGTTGTGACATCAATGCTAAATAAGGCTCTGTACTACAGACCTATTAAGCCTGAACAACctgataaaatacattattttgagagTGTGATGGTTTTGTTCACACACTATAAGAAgactaaaataaagcaaaacaaaaacgttgACCAAAGtgattgcttttgcttttttttttttctacacgCCTTTCTACTCCGGCTCCACAGCTTTCCACCCACACACCGCCCCGAAGAATCCCGGCCCATGACTCCACACTGCGCTAGCTGCCTGGCTGTAATGTGTTACACAGACCAGGGATATGAAATCAAATCTACATAAATTATACAGTAATAGCACTGATACAAATTTAAAGCTTACGGAATGTGAGACATTGATATttctaaaagaaagaaatcagggcaggaaaacaaaagaagtaGGCAGCGATTTGAGAGGGCAATGATTTAACAGCTCTGACATAATGTGTGGGAATGTGCCTCCTTCTGCTGCAGGCCGGCCCTGGCGGTGACCCAGAGAGACTGAGCTGAAGACAGAGGAGGCACAAATTAAACTGCTTAGCATGTTTTGCTACAGTAAAGGCACAGATGCAGCTCAGATGCACACAAACAGTagtaatgattaaataatacatcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30172 True 2551 lncRNA 0.46 1 19815795 19818345

Neighbor

gene id symbol gene type direction distance location
AMCG00007478 sltm,LOC106587340 coding upstream 23037 19780577 ~ 19792758 (+)
AMCG00007476 myo1e,LOC102792200,LOC103362848 coding upstream 101692 19666801 ~ 19714103 (+)
AMCG00007473 NA coding upstream 212836 19592421 ~ 19602959 (+)
AMCG00007472 mcee coding upstream 224895 19580414 ~ 19590900 (+)
AMCG00007468 LOC107595092 coding upstream 336706 19463556 ~ 19479089 (+)
AMCG00007482 adam10,LOC101172489,LOC108428395,LOC106587342,LOC107704208 coding downstream 62723 19881068 ~ 19910112 (+)
AMCG00007488 aldh1a2 coding downstream 160595 19978940 ~ 19992609 (+)
AMCG00007497 NA coding downstream 419494 20237839 ~ 20251499 (+)
AMCG00007495 NA coding downstream 449815 20268160 ~ 20275806 (+)
AMCG00007496 LOC100538179,LOC107571204,LOC107741823 coding downstream 507131 20325476 ~ 20335371 (+)
G24085 NA non-coding upstream 12329 19802853 ~ 19803466 (+)
G24083 NA non-coding upstream 15843 19799485 ~ 19799952 (+)
G24040 NA non-coding upstream 164921 19650656 ~ 19650874 (+)
G24030 NA non-coding upstream 185188 19629304 ~ 19630607 (+)
G23891 casc4 non-coding upstream 703470 19048086 ~ 19112325 (+)
G24156 NA non-coding downstream 243628 20061973 ~ 20091627 (+)
G24167 NA non-coding downstream 286375 20104720 ~ 20105070 (+)
G24202 NA non-coding downstream 437801 20256146 ~ 20256402 (+)
G24205 NA non-coding downstream 447048 20265393 ~ 20265614 (+)
G24212 NA non-coding downstream 518976 20337321 ~ 20339803 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 759662 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 800896 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 1245323 18567242 ~ 18570472 (+)
G23724 NA other upstream 1523457 18290108 ~ 18292338 (+)
AMCG00007414 NA other upstream 1590859 18217730 ~ 18224936 (+)
AMCG00007483 NA other downstream 120825 19939170 ~ 19951428 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other downstream 1241814 21060159 ~ 21066783 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other downstream 2313228 22131573 ~ 22134714 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 2370900 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 2445175 22263520 ~ 22266409 (+)

Expression


Co-expression Network