G24335


Basic Information

Item Value
gene id G24335
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21060260 ~ 21066733 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30495
ATTTgtgcaaaactattttatttacaaaaaatggCACAAATGTGACTGCACAGTCTATGCACATGCACACTTCAAACATTTCCTTAGTGAGTTACCAGCTAGAAAACCTAAATGAGAAtggttttaaatagttttcagcACACATTCAGGACTAGGTTCACAAGGATTTTTCCAGGGTGGACAAATATTGCCCAAGAAAAACTGCAATTGATAAAGCTGAATGAGGTTTAAGGCCATTTTTGAAATTCAAGATTTTAGGCAAGCAAACACCAACCTGTTAGAACCTAGTTTCACACATGCTCTTTTTTTgattttcagattattattttttctccataaCATTACTCTGCTGCAATATCTGTATGgtccattctttatttcttaatatataaaacaaagaacatagCAGTAATAAGGGTgtgatggggggagggggaaagaCGTACATAATTGaagattatattaaataattcaagCACATTACTTCATAATTTAGATGAAGATAAGGAATGAtacagtaaaaatgtaaaactttctAAAATGTTGACTCCTGCCATCACTCCAAACACTAGGAAATATGTACACTTTCAATCAAAaactacagtacatttaaaccaTCAAGTATAACTTTGCAAGCTTTAGGATTCTTCCTCAGCATCTATTCCAGGTACTACACTTTGTGAACTTCTCCTTAAGCAGCACTAGTTACTGGAATCTGCCTACCAGTCAAGTGTTCTTAGAGCGCTTATCAATGGaagtataaaaagaaaaaaaaatacaaagaaaataagaaaactaataGATGAAGGGGGACAATAACAGGGATGAGAAAAGAGGAATGAGAACAAAAGCAGTGCAGTCGTAAAGCTCCCATCAACCTGCCAGCTTGCTAGCAACGAGAGAGGGTTTTCTCTGAGGCAGGTCTTGCGGTGTGGGGATGTGGTCTCCAGTTATCTCCGCCTTCTCTGCAGTGGCAGTAGGTAGTTGCTTGTTCTTCATCTTGGCCTTCGCCATGTTGTAGTCCCcagaatcaaaatatttttCCCTTTCTGAAGTCTTTTCCTGAGGAAGTCTGAGCCCCCAGGCTTGGCACCGAGGTGAGGATACCGAGCTTTCAGCTTCGCCTCTTCCACCTTCTCAGGGCTGATCACCTTATCCTCCATTTCCCGCTGCTCTTCGGTTGATGCTTCTTCGATGGTCTTTGTTTCTTCCATCTCCCCAGACATGACtgtaaataaatggaaacaaatgggAGAAAATAGGAAGCTTCCCTCTCACTCCCAACTCGCTGTCTCAAATACCTCCTCCCGCAAAAAAATGGCTGCCCGTTTTAAAACGTCATTCTCgggcttttttttgtgtgtgtgtacagcgttaactttttttaaacggaaaaaaaggtaaaactaTCGTATTTTCCACAAACCGaatatctatacatatttaGTAAAATGTGTCTA
>TU30496
ATTTgtgcaaaactattttatttacaaaaaatggCACAAATGTGACTGCACAGTCTATGCACATGCACACTTCAAACATTTCCTTAGTGAGTTACCAGCTAGAAAACCTAAATGAGAAtggttttaaatagttttcagcACACATTCAGGACTAGGTTCACAAGGATTTTTCCAGGGTGGACAAATATTGCCCAAGAAAAACTGCAATTGATAAAGCTGAATGAGGTTTAAGGCCATTTTTGAAATTCAAGATTTTAGGCAAGCAAACACCAACCTGTTAGAACCTAGTTTCACACATGCTCTTTTTTTgattttcagattattattttttctccataaCATTACTCTGCTGCAATATCTGTATGgtccattctttatttcttaatatataaaacaaagaacatagCAGTAATAAGGGTgtgatggggggagggggaaagaCGTACATAATTGaagattatattaaataattcaagCACATTACTTCATAATTTAGATGAAGATAAGGAATGAtacagtaaaaatgtaaaactttctAAAATGTTGACTCCTGCCATCACTCCAAACACTAGGAAATATGTACACTTTCAATCAAAaactacagtacatttaaaccaTCAAGTATAACTTTGCAAGCTTTAGGATTCTTCCTCAGCATCTATTCCAGGTACTACACTTTGTGAACTTCTCCTTAAGCAGCACTAGTTACTGGAATCTGCCTACCAGTCAAGTGTTCTTAGAGCGCTTATCAATGGaagtataaaaagaaaaaaaaatacaaagaaaataagaaaactaataGATGAAGGGGGACAATAACAGGGATGAGAAAAGAGGAATGAGAACAAAAGCAGTGCAGTCGTAAAGCTCCCATCAACCTGCCAGCTTGCTAGCAACGAGAGAGGGTTTTCTCTGAGGCAGGTCTTGCGGTGTGGGGATGTGGTCTCCAGTTATCTCCGCCTTCTCTGCAGTGGCAGTAGGTAGTTGCTTGTTCTTCATCTTGGCCTTCGCCATGTTGTAGTCCCcagaatcaaaatatttttCCCTTTCTGAAGTCTTTTCCTGAGGAAGTCTGAGCCCCCAGGCTTGGCACCGAGGTGAGGATACCGAGCTTTCAGCTTCGCCTCTTCCACCTTCTCAGGGCTGATCACCTTATCCTCCATTTCCTATAGAAATAAGGAGCACACAGTTTCTGACTGCATCATACCTTACCCAAATCTTTCTTAAAGAGGTCATCAAATCAACGACTACACTGCCAAATGCTTCCCAATCAGGTCAATAACTTTGAAAGAACATGCCGACAGGCTAAACTTAGGACAGCACAATGTTAGCTACTACAGCCTCCTCAAAATAGTTCAAACATTATCTGAACCCATCTATCCTTAGttagaacaaaaatataaaatcactgGTTTATGTTCAATATGTATTTAGTGGAGATTCAGGAAAGCATTCCTCTTATTATCAGAGTTTCTGCATCCATGTGTCAAACAAAACGGACCTCACATCTTCACATGACTATTGCTGTGAGTAAAGTGACCACAGAAAAATCCACAGCACTACCAACAGACAGGAGGGCTGTTCTTCAACACAACTCTGTAATAACAAACAATGAAGCCTCCACAAGTCAACCCATGCCTTCCAATCATCGATTGAAGAAAGATTTTTGGGCGTTTGAAGCAGACAAACCATGTCAGACATGAACATAGCAACGATCAAACAAGGAGAAAACTACATTTGAGTCTTATTTGTGAAAGATTCAACCTTTTAATCATTAAGGTGAAGTCCtttatacaaaaagaaagaataaaaatcaATTGACATGCATCACTTTGATCTTTCCTTTGATCAGAACCCTGAAGCATCAAAGCGttcaaattatgtttaaatCCAACATTATCCTGTTCTTCCATACCCTACAGACAATGGATTCCCCCTCATATAACAAACCTACTTCAGATCACTTACAATTTGCTGGATGAagacatttttacataaaattcCACTCTGAGAATTTAACGTATCCAgtaaatgctgaaaaaaaaaaaagattactgACATTACAATGCTTACCTTAGATCTTtttaaccaaaatgtttttggaCCAAGcagcaaaagtaaaaaaacgTTTGGATTGAACGGTGCACTGCTCAGAAGTGACTGAATGCAGCAGAGGCATGCACAGAGGATGAGGAATATGGCTTGAGCAGCGAAAACAAACAACTGATACATTTGTGCTTCAAAAGGGGGATGGGGACAAGGGCTGGGACAAAGAATAAGGCTCTGTGAATACGCCAGCACAATAATCAAAGAGGATTTATTTGAAGACAAATCAATAACTCCCACCATCACGAAGAACCAGCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30495 False 1460 lncRNA 0.39 3 21060260 21066733
TU30496 True 2366 lncRNA 0.38 2 21063685 21066733

Neighbor

gene id symbol gene type direction distance location
AMCG00007510 unc13c,LOC107712779,LOC108411445,LOC107554226 coding downstream 343118 20713551 ~ 20717142 (-)
AMCG00007511 unc13c,LOC108411445 coding downstream 383926 20648257 ~ 20676334 (-)
AMCG00007508 unc13c,LOC108411445 coding downstream 442098 20606183 ~ 20618162 (-)
AMCG00007507 NA coding downstream 471061 20587572 ~ 20589199 (-)
AMCG00007502 NA coding downstream 567759 20487431 ~ 20492501 (-)
AMCG00007520 mapk6,LOC107588533,LOC107747613,LOC107550634,LOC107704268,LOC107746943 coding upstream 147883 21214616 ~ 21224494 (-)
AMCG00007521 leo1,LOC102793363,LOC106594225 coding upstream 190845 21257578 ~ 21264539 (-)
AMCG00007526 NA coding upstream 255499 21322232 ~ 21335390 (-)
AMCG00007527 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582 coding upstream 287787 21354520 ~ 21357001 (-)
AMCG00007529 NA coding upstream 330953 21397686 ~ 21402540 (-)
G24271 rsl24d1,LOC105018348 non-coding downstream 542787 20513786 ~ 20517473 (-)
G24243 NA non-coding downstream 593825 20465253 ~ 20466435 (-)
G24221 NA non-coding downstream 715881 20344039 ~ 20344379 (-)
G24219 NA non-coding downstream 720351 20337301 ~ 20339909 (-)
G24218 LOC100538179 non-coding downstream 723092 20335071 ~ 20337168 (-)
G24410 NA non-coding upstream 83541 21150274 ~ 21177594 (-)
G24409 NA non-coding upstream 114188 21180921 ~ 21186161 (-)
G24430 NA non-coding upstream 229645 21296378 ~ 21375032 (-)
G24464 NA non-coding upstream 644789 21711522 ~ 21718039 (-)
G24469 NA non-coding upstream 688858 21755591 ~ 21755946 (-)
AMCG00007500 NA other downstream 587341 20462504 ~ 20472919 (-)
G24217 NA other downstream 728449 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 838256 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 1137107 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 1260508 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 1273866 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 1494763 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 2340195 23406928 ~ 23420303 (-)
G25026 NA other upstream 2904938 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 3195957 24262690 ~ 24281564 (-)

Expression


Co-expression Network