G24464


Basic Information

Item Value
gene id G24464
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 21711522 ~ 21718039 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30680
TTAAAGAACTAAATCttctgcactgaaatattttatttcaactatacatgctgtgttaaaaaaacaaaaaacataacaaaaaaacaatgtacgtaattatttacacattcacaGTACAAGTTTACAAGGTATCTACACATGTTAAAGTACTCTGTAAGACATACAACAACTGAACGTCAGCTCTGAATTTGcacagtattaaaaacaaaaagttgacAACTCTGGTTTATTTGCACACAAAgcattttaactgaaatgtaaaggCTTGGATAAGTCAAATTGCAACATAAAGACAGTATGAATTCACATTGCAATATACAAGGCAGCTCAACATTACAAACCTTTGAAGATGGATCACGTGTACAGTTTTCACTTTGTACAAAAACTGGTTATTAGCAGGTACAGACAACTAACTTAATGGAtttacagttttgaaaatgtgtttgtaaacaAAATTCAACTTTGGGCTCATATAGGCAACAAAGCGTACTCGGTCAGTCAGAATGAAGCTATTAACATTGGAACATGGGAACCTTCCCTGGCTTACTTCTATCTGCTCTCAAGAGTGAAGGATTGTACGTCATTTTCAAGACATGGTGTTCAACCCTCCTGTCCCACACATCTGTGATATCACTGCTGTTcgatatatatatcttttttaacTCCCTGATGAAAATCTTAAATTTGAGACaggcatagttttttttttctccttatcTTTTTATCTGATTACATAAATAACACCCCCCCACAATATCTCTGATTCAAGAGTTTCATAAAAGAGCAATGGAGAATCTTGCACAAGACAAATATGGAGAACTTAAAATGGAATGCTACAGAAAATGCTGATCTTACTGATAATTGAAATGCTTGGATTTACTATGCTTTGTTAATTCTTGAAATGTATCACTTTCTTGAAGCAGACCAAATCATTGTTCTTATAATGGAGCTTATTATATGTCTTGCATTATGGAATCAAGTCTGATATTGTTTCAGATGGTAATTATACATATTGTGGTTACCATTTAAAGTGTATGTTACTACTCCCTGTTATATTAGTGTTTTACATTCACTGAAGGGTACTTCAGCTTTGCAAAGTAGCAcctctcttaaaaaaaaaaaaaaataataataaaacatgactttaaccagaaaaaaatgaaaaagccagTGTATTCTGCTTAGGTCAGATATTCAATACTCTTATAATGGAATGTTTATAACTAGAGTTGGCtgttattttgtacaaatgCAGTTTTGGTACTTGAATTTGTtgaactattaaaaaaaaactagtttttgtataataaaatgttccaACTGGCACACTGAAAGTTTAATGCTCAAGAACACTtgtcattttcaatatttataacCATGTTCATTGAATAAGGCACACAATGCACAGATTCAGGTAAACttcccaaagaaaaaaaaatatttacactttgTCATTACCTGCATGACCTTTCGGGACACTCTTGGTACTCTTTCAAGATGattgcacaattattttttcaagggATAGCTGCTTGACAGATTTTGAAATTCAATTACACCTCTGAATcagttgttttaaaagcattagaAACAAATGTGAGCCCTGAATCAGTACAAAGGCAGTGTTATTTTCTTAGTTCTCATGAACGGTGAGGGGGAAAAACTATTGCAACAGCCATGCATTTTGTAGACTCACTCTGTATGAGCTTCCCCAAACATTCCAACATGAACTGCTCTCCCCATCCCTGCCACTCCATCCTGGACCTTGTCTGAGCAGAGATAGGTTTGGGACTGTGCCCTGCTCTGTGGCACCAGTTATCCCCTGATAACCAGTGTGATATCATCAGTCTCACTTGCCATGTGAACTTAATGGTTAACCAAATGGTTAAGTCAAGTCAAGGCTCATAGAATTGCCCTTTGTGCCACACAGCTCCCACAAAGACAGCACAGAACGCTTTACTTAACTCCTCGATTCAAGAACTGGAGCTTCAATTCACAGTGGCTTGGCAGACTTAAGAGAACCAAAATGCATATGTAAATGGAGAACTACAGCTAGATAGCAATGCTTTTGAGtccaaaatacacaaataacttTAACCAATAGCAGCAAGTAAGTTTAGTAATTTCCCAGTGAGTTAAAATAGTAATCCAAGTAGGCACCCTGGACTGATCATGTACACAGATAACCTCAGATTATTGCCCTCAACAAACCTGACGTTAATGAATCTGAGTCATCTGCTGTTTTGTTGTCCGAGTATAAGGAGTTGTTCCTGTCTTTAACTGACTGCACAACAGACAATGTAAGTGCAccctaatgtgtgtgtgcatacttTACACACAGTATTAGCATTAGTCTGTGACAGACATTCTACTTTATATGAAATGTCTCTGCTAAAATCTTtccataaatgcattttttcagtgTCAAGGCCATATGCTATGTCTAAACATCAAGTTTTCTGATATTTCGTGCAAATGGCTCGACAAATGcatactttttttcttgttttataaaGTTCACATTTAATGGGAAGACAATGCTCAGTGGCAGTGAATAATGGAACCCATTCTTCAAGTATTCTTGCATGTAAAATCTCTTAATGCCGGAATGGCATAACTGcataaaatgaacaattaagCTCCCCCATGCAGTTTGTTTCCCCCAACTCCAGAATCCAGACTCACGAACGCAACAAACGTCACGACCACTCTGTGTCTTTGCATCCCAGAAAGAAACCCGGTCACAGACCTTCGGGTTTtagtttgcaaaaaaacaaaatcgagAAGATGCTGCTGGAAGTAGCTTCTTTGGCCACTTGCTTTTCCCTTATTCGAGTACAGTCAGTCTGGACTTCCAACAACATCAGGAAAACCCTCAGCAGGTCTTTAACCCCCATGTAACCCCCACAGTCCTCTAACAGAGTCATCGTACACCTTTAGTAGCTGTACTTGTTCACTGCTCTGATTTGTGTAGTTTGGGGGACAAACCCATTGGGTTTAGGGGGGACGTCTGGCTTTAGAGAGGGTGTCCTCTTGATTCCAGTACGTGGAAGAGAACCTTGCCCACTGTAGCTACTTTGTCTGGATAGTGAGGGCTGCTGATGAACACCAATAGGTGCTCCATGTGAGTCTACTCTGGAAGGTGGTGTGGGAGGAATGTACCCCCCTCTGTTCATACTTGGCTGCCTTGATAAGACAATGCCATTTGGTGAGTTTATGTTTTTAGGAAGGGCTGATATGGAGTGCCTCTGAGAAGAATTCCGGTGATAGCCCCTCTGTCTTTCCAGAGTGTTCATTTGCATTGTGGGAGTGGTTGGGGTAGTAGGCACGTCTACCCTCTTTGTGGGGCTGTTCCGCGGTAGGGTGGAGGAGGGAGAATACAATGAAGCCTCCCTGCTGGGAACCTTTGGTGGTATTTCAGTCATGTTTGCCATTGGTTCCAGCATCATGTTTTGGCGGGTCATAGGAATATCGCCCAAAATAGCTTTTGGGTTGGTGTTGGTTTCATTTAAGTGCTTCAGAAGATCATTCAGGGTATTCCTTGCATCAACTGAGCGCCTGTGGTCCTTTTTGCTGGATTTACTAGACGGAGGCTGATCGATATTTTGAATCTTCCTTTCTGATCGGAGGACGTCTGCATTGGAAAAGGAAGCCCGGTAGTCATGGGTGGCGTTTGGAAGAACAACAGCACTCGGAATGTGAGAATGCCCCATAGGAGAGTGAGGAGGAGGGCTAGAAGGGAAGTATTGAGGACTTTTGAGTGGAGATTCCTTCCtggaagcatttattttgttgtgagaTTTTTCCCACTGATTTTTGATCGGTTGGAGGCTCTTCTGTTGGAGAACTGGGGTAGACTCCGGAGTGGGAAGAGCAGCAAGTTCTGGAGGCTGGCACTGGCTGCTCAAAATCATTGTCTTTGTGTCTCCATTGGGTGGCATCTCTTTCCCGTTGCTCAGCAGATTTGTGTACAGCTTAGGAGAATCAATATTTTGTTGGTATTCCTTCACAGGGCTATCAAACAAGCCGTTGAGTTTAGCAAAGCTTCCACTGGAGTCTGTGCAAGACTGGGCTGATTCGGCGTCCTTGTGGATTTTTCTTGATTTCCGTAAGAAAGCATCCCGGTAGCAGTAAACTATGACCCCAGCGATGAACGCTCCCAGTAGAAAAGCAGCAAAAACGCAGGTGATCAGGACATTCATGTGGACCATCTGGTTAGACTCCCCTGACTGCACCTCCCACACACTTTGGGGCACCTGGTAATGAATCAAAAGAATGTGAAGTGCCTGGGTCATCTTGGAGCACAAATTTCCTTGAACCAGACAGTTCAGGTTTCTGAGAGCCAATGATTTGGGGTGATTCTATGAGGCCAGATGCCACTGTTGTGACAGTAGGTGATGACAACTTCATGTCTGTGGTGACAAACACATTGTTAACATTTGGTACACATGGTGAATAAGACATACCTTTAACTACCATGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30680 True 4483 lncRNA 0.40 2 21711522 21718039

Neighbor

gene id symbol gene type direction distance location
AMCG00007530 dmxl2,LOC107700583 coding downstream 258105 21424933 ~ 21453417 (-)
AMCG00007529 NA coding downstream 308982 21397686 ~ 21402540 (-)
AMCG00007527 tnfaip8l3,LOC107746937,LOC107588557,LOC107700582 coding downstream 354521 21354520 ~ 21357001 (-)
AMCG00007526 NA coding downstream 376132 21322232 ~ 21335390 (-)
AMCG00007521 leo1,LOC102793363,LOC106594225 coding downstream 446983 21257578 ~ 21264539 (-)
AMCG00007535 myef2 coding upstream 42629 21760668 ~ 21769423 (-)
AMCG00007545 fbn1 coding upstream 93441 21811480 ~ 21880303 (-)
AMCG00007544 NA coding upstream 180328 21898367 ~ 21918778 (-)
AMCG00007540 NA coding upstream 207910 21925949 ~ 21942925 (-)
AMCG00007539 LOC106587774 coding upstream 234646 21952685 ~ 21973858 (-)
G24430 NA non-coding downstream 336490 21296378 ~ 21375032 (-)
G24409 NA non-coding downstream 525361 21180921 ~ 21186161 (-)
G24410 NA non-coding downstream 533928 21150274 ~ 21177594 (-)
G24335 NA non-coding downstream 644789 21060260 ~ 21066733 (-)
G24271 rsl24d1,LOC105018348 non-coding downstream 1194049 20513786 ~ 20517473 (-)
G24469 NA non-coding upstream 37552 21755591 ~ 21755946 (-)
G24470 NA non-coding upstream 39848 21757887 ~ 21758169 (-)
G24503 NA non-coding upstream 88081 21806120 ~ 21807061 (-)
G24515 NA non-coding upstream 224913 21942952 ~ 21943671 (-)
G24551 NA non-coding upstream 287695 22005734 ~ 22009433 (-)
AMCG00007500 NA other downstream 1238603 20462504 ~ 20472919 (-)
G24217 NA other downstream 1379711 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 1489518 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 1788369 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 1911770 19791701 ~ 19799752 (-)
AMCG00007565 gatm other upstream 622560 22340599 ~ 22358446 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 843457 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 1688889 23406928 ~ 23420303 (-)
G25026 NA other upstream 2253632 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 2544651 24262690 ~ 24281564 (-)

Expression


Co-expression Network