G24654


Basic Information

Item Value
gene id G24654
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22340736 ~ 22343616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30934
atcccattggatatttttttattgaatgtgttTAATCCAAACCGCagatacattgttttttcatcATTCTGTACTTCCTTTCTTTGCATTGTTAACCACAGTTATAGACCACCACCATAAAAAATTGTCTAAAATTATACATAGAAACtcacaattaatcacatttcatttttagtaaataaaataagcaataattATCCTTTACAAAATAGTAGAAATTGTTCATCATTGTGTTTAGACtaagatgttttatttgtttattttaatttgcgtTTTTCCTATGGCTCAATGTAAGAACTGTCACCTAAGACATTATCTACACAACAGTGCTCTTCAGGGCATACTGAATAACTTGAACTACTGCAAAATAACCCCTTATTCTTCTCGGGCTGTAGAAATGTGTTTCCTATTGTTACCAAACCACTCACCAGGTGTGAGCTTCTGTCTTAGAATCATTTTAGATATGGGATGGCCTGGTGAACTGATCCACCATCTCACGAGTGCCTGAATACTGGTACAGTCATACACCCTATCCATACTTCCTAAATTACACATCAATCATACATTCCACAACATTAATTGTCCATTGTCTGATATAAAGGAGGTATTCAGCAAGCTCATTTTCACAGCTTGATGGTATTTGAAAGAATAGAGGCATGAATCTCCTCAGTCATTGGTACATAGCTCTTCTTGCTTTCATCCAGGAAGTAGAGGGGATCCTGAACAAGAACAGGATTGAAGCCCTCTTCTACTAGTTTCACTTTCATCTGTTTGAATGTCCCAGTAACCTCCAGGGCGTTCTGAACTCTTACAAAACGTGGTCTTGCATAACTTGGTATGTAGTTGACAATATGGCTATATATTTTGTCACACTCaaattgtttttccttctttaatgTAACAGAAGCCATTCCTATTCTTCCTTCATGCCCTTGTACTTTAACTCCATATACATTGGCTTCTTCAATACAGTCCACCATTGTAAAGACATCAGCAACCTCTGTTGTGGCCACATTCTCACCTTTCCACCTGAAGGTGTCTCCAACCCTGTCTTGAAAATAGATGAAGTTGTCCTGGTCAATCCTTAGCAAGTCTCCACTATTGTAATACAGGTCTCCTTTCATAAAGACATCCCTCAATCTCTTCTTGTCCGTTTGCTGTTGGTTTTTGGCATATCCAGCAAAAGGAGCAATTTTGGTGATCTTTGATACTAAAAGACCAGTCTCAC
>TU30935
atcccattggatatttttttattgaatgtgttTAATCCAAACCGCagatacattgttttttcatcATTCTGTACTTCCTTTCTTTGCATTGTTAACCACAGTTATAGACCACCACCATAAAAAATTGTCTAAAATTATACATAGAAACtcacaattaatcacatttcatttttagtaaataaaataagcaataattATCCTTTACAAAATAGTAGAAATTGTTCATCATTGTGTTTAGACtaagatgttttatttgtttattttaatttgcgtTTTTCCTATGGCTCAATGTAAGAACTGTCACCTAAGACATTATCTACACAACAGTGCTCTTCAGGGCATACTGAATAACTTGAACTACTGCAAAATAACCCCTTATTCTTCTCGGGCTGTAGAAATGTGTTTCCTATTGTTACCAAACCACTCACCAGGTGTGAGCTTCTGTCTTAGAATCATTTTAGATATGGGATGGCCTGGTGAACTGATCCACCATCTCACGAGTGCCTGAATACTGGTACAGTCATACACCCTATCCATACTTCCTAAATTACACATCAATCATACATTCCACAACATTAATTGTCCATTGTCTGATATAAAGGAGGTATTCAGCAAGCTCATTTTCACAGCTTGATGGTATTTGAAAGAATAGAGGCATGAATCTCCTCAGTCATTGGTACATAGCTCTTCTTGCTTTCATCCAGGAAGTAGAGGGGATCCTGAACAAGAACAGGATTGAAGCCCTCTTCTACTAGTTTCACTTTCATCTGTTTGAATGTCCCAGTAACCTCCAGGGCGTTCTGAACTCTTACAAAACGTGGTCTTGCATAACTTGGTATGTAGTTGACAATATGGCTATATATTTTGTCACACTCaaattgtttttccttctttaatgTAACAGAAGCCATTCCTATTCTTCCTTCATGCCCTTGGGGATAAAGCATacagagttatttattttgtctctaaatcaaatatatacttGACATTAGATGTCTAGACATCATATATGATCTAAAGGCAAGGCTCaggaaacaataaagcaaacttATAGTGAAAAGATGGAAGTTTCTTATACagtgcacaaacacaaaacagaaatacagaaaaccaaataaaaacctAGCTCCTCTCGAGCCTAACTAAACTGCTGCTCAGGGTCCCTCTCTACACATATAACtaagaataaacacaaacacaatcatccATACACAGTCTATAATCTGTAATCAATCCAAAGTTCAAAAGCAATGTCCCATTACCATTTTCAATGCTGTCTctctttcattcattcactctAACACAACCCTCCTCCCAGGCTTGCTTCCTGCCTTCCCAACAACAGGAAGGGGATCGCTTCTCTGTTTTATAGAGGCAGGGAGCCAGTCACAGTGGGAACAGCAGGTCAGCTGTTCCGCCAGTAATTTCCCTCCCACGGGGTCTGGGGAAGGTAGTTCGGGGTGGATACTCTCTGCGCCACCCATTGTggcatca

Function

GO: NA

KEGG:

id description
ko00680 Methane metabolism
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU30934 False 1228 lncRNA 0.37 4 22340736 22343616
TU30935 True 1497 lncRNA 0.38 2 22340736 22342563

Neighbor

gene id symbol gene type direction distance location
AMCG00007559 NA coding upstream 9271 22322724 ~ 22331465 (+)
AMCG00007560 gabpb1 coding upstream 33477 22296054 ~ 22307259 (+)
AMCG00007556 NA coding upstream 66557 22268514 ~ 22274179 (+)
AMCG00007557 trpm7 coding upstream 78883 22232527 ~ 22261853 (+)
AMCG00007555 NA coding upstream 124496 22204776 ~ 22216240 (+)
AMCG00007561 gatm,LOC106595761 coding downstream 9996 22353612 ~ 22364194 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding downstream 65312 22408928 ~ 22431845 (+)
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding downstream 98379 22441995 ~ 22448954 (+)
AMCG00007569 NA coding downstream 119490 22463106 ~ 22474401 (+)
AMCG00007567 NA coding downstream 174880 22518496 ~ 22520287 (+)
G24570 NA non-coding upstream 192498 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 942689 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1459812 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1463951 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1846731 20492904 ~ 20494005 (+)
G24692 NA non-coding downstream 106491 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 110200 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 111650 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 115404 22459020 ~ 22459517 (+)
G24699 NA non-coding downstream 116268 22459884 ~ 22460313 (+)
G24606 NA other upstream 57778 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 74327 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 136785 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 206022 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1273953 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 790195 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 845844 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1314234 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1848605 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 2132871 24476487 ~ 24499650 (+)

Expression


Co-expression Network