G24705 (LOC105889120)


Basic Information

Item Value
gene id G24705
gene name LOC105889120
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22446370 ~ 22448954 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU30996
tctcattcaaaatattttattacagtattcCATGGGAACAAGAACACTAATTTCTCATGTAAGAAATGTTTCACTGAAAAGTTACAGTATGAAAGTACTAGACAGCAGTGTTGGTGCATTTCAAATGATAGGACTGATTTTTGTGAGGGCAGGGTAGAGGGGACAGGAATAAAAAGGTCTACCTTTAGTGGAAGCAACTAGtttattagattttaaaagttcTTTGTGTTTGAGGtggagaaaatattatttttcctccaAAGCCTGTTGTGCAAAACCCCGCTCCACCTTTACAGTGCCAATAGCCAAATTAGTTTACTGGAAAGACTTCTTACTGCCCCGAACTCGGTCTTCCTCTTCATCAGATGAATCCCCCCCATACGGGACTAACCCCAATACATCCTCCTTCAGCTTCGGTTTCTTAGTCAAAGTGACTTGATCGCCAATATCTGCGAAGGCAAAAaatcaggagagagagacaaccagaaaaggaaagaaaacagagggagagagagaaccatACGGAAGCCCCATGTTAGCCGTAGAAAGCGTTCAATCCACAGCCAGGGGGTCATTCATGGAAAATGAAATGGCACCACACATCCAATGTGGACTGGGCACCACCTGGGCACTCCACTGGCCTAGGTCTCTTGCTGCGCACAACTCCACTgcagggagggggaggtgggggcattaacatcctgtcaacaaaaaaacaccacaaaaatcAAAGactttttgctttctttgtccCAATTTCAGTAGAAACAACCAAACAGAACTATGCAATTGGACTGGTCAACGGTTGTTCTGACAGAGACAAAGAGGCTTGTAGATGCCCGTCGTAATgagaaatgcattcaaatgcCCATATAGACTACCAGAACCGCTTCATGTACAAACCTTTCCAGTCGTCTTCCACACTCGTTACTGGCTGCAGGGGAAGTTTCCTCAGGCTTCAGGGCGGCAGGGCCTTCTGAGCAGCTAGGTCCATCAGCTGGTCCACACTGGAAGTCCACACATACTATGAGTTTCCCCAAATATACAGCAACTGAACATTGAAAAAATCTAAGCAAAAGTCCCCAAAACCAAAAGGTTTCCTCTATAAAGCGTCTCTTTGGACTACCAGCACAGGGAGGACTGTATGGGGAGCAATCAGTCGCTGTGGTGTAAGTGGTTCCGGGGTCCTTGGACAAAGCACAAGACTGTGATGCACATGATGGATCTATTGTACCCTGGAGACTCACTCAAAAATTTAAAATCAGCACATACACTCACAGCagcctttaaattatattaatttcctttagAAACACCTGAGATGAAAGGGGCTCACATAGTGCATAAAATTGACAGATGCAGGGGTATCCAGAGTATGTTACATGACTTGCATTAACatgaaaatggtttaaaattatacaaatgagaaaataacacaCTAATTAGATTTGCTATGTCATGAAAAAAACTTGCCACAAGCTTACTAACAAGATCGTAAGATTAATTCAAATTTCCAATTTTCTTTTGCATAAATTAAGTTATGCAATAACGGTGTACTGCTCAGGAGGCCATATGTTTTTTCAGCCTTTGAAGCAAACACTGGACTGAGTTTCAGTGGGGGGGCACTGGCCATCACAGCGGCCAATCTCAGGATGCTGGCTTCCCACAAGAATTGTGGTGAACCAGACAGGATCCCACCTAAAGAACTCAGTCAACTACATCCCTGTACGGCTGAGCCCAACTATTCGCACTAAACATTAAGCATTCCCAGACAAGTGTACCAACTGCATTAACATGCAAACCCACAGTGAACATCAAAATAACAGGACCCAAGGTTAAAACCTTGTAGATCACCATATACACATGGTTGGTTTTATAACAAAATGTACTCTAATCCACACTGCTTAGATCCTAAACGTCAGTCCAAGAACATTTCTAAAGGCTTTATCAGATTAAGCACTCCCCACCACCTTGAGCTGTGTATGTACACATAGCATCTGTCTGTTTAAAggtatttaaagatttaaatttaaaaaaaaaaaaaaaaaaaaaaaacctacccGTTCTAAATATGGTGGTGGTTTCCTAGGACACACTGGATACTGAACCATTGCCTGAGAAGATTGAGGGGTTGTCGAAATGTTAGAATGACTGTGATGACCATTTGAACTACTCCAATAACCACTGGATCCTGGATATGCAGAATAGGCGCCCATGTAACCATTTGATGGGTAGTTATACCAGGATACCTGGCTACAGTAATTGCTATTAGGTGGGTATCCATGAGAAGATGGGTATGC

Function

NR:

description
PREDICTED: UPF0469 protein KIAA0907-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30996 True 2300 lncRNA 0.42 2 22446370 22448954

Neighbor

gene id symbol gene type direction distance location
AMCG00007566 NA coding downstream 109296 22332066 ~ 22337074 (-)
AMCG00007558 usp8,LOC102785891 coding downstream 158134 22276111 ~ 22288236 (-)
AMCG00007552 LOC100693649,LOC108251187,LOC102204817,LOC101075467,LOC105022653 coding downstream 265249 22177466 ~ 22181121 (-)
AMCG00007550 NA coding downstream 292870 22144749 ~ 22153500 (-)
AMCG00007551 atp8b4,LOC107688930,LOC107712521 coding downstream 328268 22069642 ~ 22118102 (-)
AMCG00007564 NA coding upstream 331 22449285 ~ 22470431 (-)
AMCG00007571 NA coding upstream 26456 22475410 ~ 22487415 (-)
AMCG00007573 NA coding upstream 83702 22532656 ~ 22535178 (-)
AMCG00007574 btbd1,LOC106562729 coding upstream 96580 22545534 ~ 22551557 (-)
AMCG00007576 bnc1,LOC106591559 coding upstream 134775 22583729 ~ 22618108 (-)
G24687 NA non-coding downstream 14057 22432067 ~ 22432313 (-)
G24640 NA non-coding downstream 183877 22260847 ~ 22262493 (-)
G24579 NA non-coding downstream 312389 22131389 ~ 22133981 (-)
G24551 NA non-coding downstream 436937 22005734 ~ 22009433 (-)
G24515 NA non-coding downstream 502699 21942952 ~ 21943671 (-)
G24721 NA non-coding upstream 69468 22518422 ~ 22521084 (-)
G24797 NA non-coding upstream 505131 22954085 ~ 22954844 (-)
G24800 NA non-coding upstream 597159 23046113 ~ 23046373 (-)
G24816 NA non-coding upstream 684837 23133791 ~ 23134802 (-)
G24905 NA non-coding upstream 974659 23423613 ~ 23437517 (-)
AMCG00007565 gatm other downstream 87924 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 1973451 20462504 ~ 20472919 (-)
G24217 NA other downstream 2114559 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 2224366 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 2523217 19915146 ~ 19923153 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 112542 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 957974 23406928 ~ 23420303 (-)
G25026 NA other upstream 1522717 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 1813736 24262690 ~ 24281564 (-)
G25422 NA other upstream 2815378 25264332 ~ 25264951 (-)

Expression


Co-expression Network