G24742


Basic Information

Item Value
gene id G24742
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22581469 ~ 22583154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31039
tgaagatatttttttattaaatgtttcaattacagccatttattttgtctttatgaCCTGTCTTGTATAAATCAAATTTCTTCTACACATTGCGTATAAAACAATTTTCCTTGTAATGAagagaaataacaaatacttaACTAAACAAAGGCATGCAAACAAATATGGCTTTTAACTTAGAGGGAATTAATACTGTTATaacaattcaaaaataataagaaaatggaTTTACATTtaccatttgtttttacaaaagctcacaaattgacaaataaatggttatttatttaatgataattGGGGGAATCAAACAACACTAGAGTAACACATTGCAAAAGGTAGAAAAGTGAGGCATGACAAAATGTTAGATATTTTTTGGCTGTCTTTAACACTTTCAATTCTTTACTTTTACAGATGAGAAGTAGACAAGTAATACATCCATCAAAAGAAGATGTTCGATACAGTAgaagatagattttttttttggtttctttcagaGAAGCATGTATGGTACCctattaacaaaatgtacaatttgatCAACATTATCAGTTGTCTGGCAGAAAACTTGTTAGTCAGCACACTTTACTGTGGGCTCTGTTTACAAAGCTAAAAGTGTAAAAcgtatgtattgttttctcaGTGTAAGACTGTACTTATCACAGTTTTAAGTCATGAAAACCTTTACAGTACAATGTATAAAGCATTACATGCTCAGAATCATTCTCCATATGTATTGACATTATACAGTAAATCcccttaaatatataatatataattcttGTGGATTGCATCTTTTTGAATAGAGCCCATAGAATCCCAACACTGAATTTATTCTAATATCGCCCTTGAAGCTTTTGAAGACAgactttaaacatttcaaattgtcCAAAAGGGCTGCTTAATACTGCTTACCTCATATTAAGAGCTCTTACAGATCTCAAAAGAGATAAATCTTTGGTCAACTTTAGCcttccataaaaaaacaaatgattacaTACAATAccaaacaataatttaatttactttgcacATACAACTACACTTTTTTACACATCTCTACCAACATTTCCAGGACCATAATCCAAAAATGCCACCAACCTAAAATTCACAGCTGTTTCAGCTGTAAATGGtaaaattggaaaacaaatactagTTCACAAGAATTCTAGACATTAGATTAGAAAAGGTCAACActaagaaagaaacatttttcatattctACTTGGCACAACTGATGCTTGAAATGTAACAAAGAGGTGAAAAGACGTTCATGCTATATAAATTTGATAGAAATGTAATGTATCATACTGATTGGAACTTGTGCTGTATGAGGCATAAGGCaagcaatattttaataaataagtgcatagaaaagtaaaaaagtgTAAACAGACTGGGAGTGCTAAtctatgtgtttttaaatcaattctagAAGAGGAAATTCACTGTGTTAGGATTTTCTGTCTAATACACAACCATGCAAATGCATAATGCAAATGTCACGTTCTGGGCAAGAACTGATCAGATTTGaggtattgtatttaaatattacttcCCATATTCAATATTCATAGCTCTATTTGAGTTATCATTACTTCTCTCTGAGAATAATTCTCAGAATTACACTATGTAGCATTTTTCTAACCATTTCTGTATTGAGTATATAGTTTATATGATATAGTT

Function

NR:

description
PREDICTED: CMP-sialic acid transporter

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31039 True 1686 lncRNA 0.30 1 22581469 22583154

Neighbor

gene id symbol gene type direction distance location
AMCG00007568 tm6sf1 coding upstream 20702 22552690 ~ 22560767 (+)
AMCG00007570 NA coding upstream 32060 22536885 ~ 22549409 (+)
AMCG00007567 NA coding upstream 61182 22518496 ~ 22520287 (+)
AMCG00007569 NA coding upstream 107068 22463106 ~ 22474401 (+)
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding upstream 132515 22441995 ~ 22448954 (+)
AMCG00007575 NA coding downstream 93892 22677046 ~ 22685708 (+)
AMCG00007577 NA coding downstream 108199 22691353 ~ 22697421 (+)
AMCG00007582 NA coding downstream 207739 22790893 ~ 22852795 (+)
AMCG00007583 efl1,LOC102798863 coding downstream 274361 22857515 ~ 22879252 (+)
AMCG00007581 LOC106562675,LOC102798863 coding downstream 323304 22906458 ~ 22920751 (+)
G24701 NA non-coding upstream 118917 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 120006 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 121156 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 121952 22459020 ~ 22459517 (+)
G24695 NA non-coding upstream 124708 22455266 ~ 22456761 (+)
G24793 NA non-coding downstream 370455 22953609 ~ 22954842 (+)
G24856 NA non-coding downstream 699534 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 822805 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 823830 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 1262350 23845504 ~ 23851902 (+)
G24606 NA other upstream 298511 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 315060 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 377518 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 446755 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1514686 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 550657 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 606306 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1074696 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1609067 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1893333 24476487 ~ 24499650 (+)

Expression


Co-expression Network