G24793


Basic Information

Item Value
gene id G24793
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22953609 ~ 22954842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31113
ATCCAAAAAAGGGACACCCTTCAGGGCTCCGATgccatttttttataatgtactgtagcttggggaaacatttttaacatcTAATGCATGTTCTAAATAATACAGAATAGTAAATCATAGATCTAGTAAATTTTaccatatatttataaatttaaaaaataacataaaaaaataagtgaagtCATGATTGAGGTACTTACGTCATATAATGTATAGACGTCTAAGCAAAACAGGCCTTCCTGCTTCCTGGCAGAGCAGGCTGGTGGCAGAACTCATGGTTAAGTACTTTGGAgtgctttgtaaaaaaaatataaaaaggagaaaaaaatcctGTAGAAAGAATATATAGATTATAGGAAAAGATACTGCAGCTTTAGCTTAagaggggagggtgggggggagcaaCAACATATCTTAGATGACAAATTCCAcacatttaaagttttaaagattaattacattaatacagattgaagtattttattcttttttgaCTTGAAAGATTATATTTCTTATTGCAAAGATGTttacaagtattttaatttaagttcaGTGAACTTTTTGTAGCTGggttaaatctttttttattttttagtatgGCCTTAGGGCAAAGaacactgtattattttaatatcacaCAAATGTGGATGGAAATACAAACCACAATATGTGTATTGCATTAAACAGTATTCTGTTGGGATGGAGGTTTTATAGGTTCAGCAAAAAATGTCTTTTAAATCTGCTTCACCCagcatattttttattcagtgatataaatcatattttattctatattattacaaaaatgaaaatgtataaaacttggtaagtaaaacaaaaaggaacaGTTTATGCTTTCTAAAATTTGTATAAATTAGATTCCAGTGGAAATTACAGAGTTCTGTTGCACCACTATAGTTTTagtatttctattttaatacatttgtttaccacttgtttatgtatatgtaggTGAAGTTACTTGAGCGTAAATGTACTTTATTGagcaaagtttaaaaacaaagtatattttattttatgataaagGGCCTTTAACCTCATGGTcaaatactaatattatatTTGCTGAAACAAGATTTGAAATTGTATcaagagttttatttttctgacatttaaaGTTCTACATAATAAAGGTAAAACTTAAGTAATGGTGCtacttcatgtttttttaagtatttctatataaatacaataaaaatggtacatgaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31113 True 1234 lncRNA 0.28 1 22953609 22954842

Neighbor

gene id symbol gene type direction distance location
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 91 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 32858 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 74357 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 100814 22790893 ~ 22852795 (+)
AMCG00007577 NA coding upstream 256188 22691353 ~ 22697421 (+)
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding downstream 162009 23116851 ~ 23132274 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 244310 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 432819 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 467174 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 738400 23693242 ~ 23708772 (+)
G24742 NA non-coding upstream 370455 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 491057 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 492146 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 493296 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 494092 22459020 ~ 22459517 (+)
G24856 NA non-coding downstream 327846 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 451117 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 452142 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 890662 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 905840 23860682 ~ 23863793 (+)
G24606 NA other upstream 670651 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 687200 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 749658 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 818895 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1886826 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 178969 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 234618 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 703008 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1237379 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1521645 24476487 ~ 24499650 (+)

Expression


Co-expression Network