G24797


Basic Information

Item Value
gene id G24797
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22954085 ~ 22954844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31117
ttttatttcatgtaccatttttattgtatttatatagaaatacttaaaaaaacatgaagtaGCACCATTACTTAAGTTTTACCTTTATTATGTAGAACtttaaatgtcagaaaaataaaactcttgATACAATTTCAAATCTTGTTTCAGCAAatataatattagtatttgACCATGAGGTTAAAGGCCctttatcataaaataaaatatactttgtttttaaactttgctCAATAAAGTACATTTACGCTCAAGTAACTTCAcctacatatacataaacaagtggtaaacaaatgtattaaaatagaaatactAAAACTATAGTGGTGCAACAGAACTCTGTAATTTCCACTGGAATCTAATTTATACAAATTTTAGAAAGCATAAACtgttcctttttgttttacttaccaagttttatacattttcatttttgtaataatatagaataaaatatgatttatatcactgaataaaaaatatgctGGGTGAAGCAGATTTAAAAGACATTTTTTGCTGAACCTATAAAACCTCCATCCCAACAGAATACTGTTTAATGCAATACACATATTGTGGTTTGTATTTCCATCCACATTTGtgtgatattaaaataatacagtgttCTTTGCCCTAAGGCcatactaaaaaataaaaaaagatttaaccCAGCTACAAAAAGTTCACtgaacttaaattaaaatacttgtaaACATCTTTGCAATAAGAAATATAATCTTTCAAGtcaaaaaagaataaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31117 True 760 lncRNA 0.25 1 22954085 22954844

Neighbor

gene id symbol gene type direction distance location
AMCG00007584 NA coding downstream 97324 22852895 ~ 22856761 (-)
AMCG00007578 NA coding downstream 246390 22697429 ~ 22707695 (-)
AMCG00007579 NA coding downstream 266650 22686236 ~ 22687435 (-)
AMCG00007576 bnc1,LOC106591559 coding downstream 335977 22583729 ~ 22618108 (-)
AMCG00007574 btbd1,LOC106562729 coding downstream 402528 22545534 ~ 22551557 (-)
AMCG00007587 NA coding upstream 184678 23139522 ~ 23166677 (-)
AMCG00007588 NA coding upstream 214524 23169368 ~ 23173117 (-)
AMCG00007592 mesdc1,LOC107709503 coding upstream 235339 23190183 ~ 23191247 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding upstream 252458 23207302 ~ 23268900 (-)
AMCG00007591 NA coding upstream 315074 23269918 ~ 23278330 (-)
G24721 NA non-coding downstream 433001 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 505131 22446370 ~ 22448954 (-)
G24687 NA non-coding downstream 521772 22432067 ~ 22432313 (-)
G24640 NA non-coding downstream 691592 22260847 ~ 22262493 (-)
G24579 NA non-coding downstream 820104 22131389 ~ 22133981 (-)
G24800 NA non-coding upstream 91269 23046113 ~ 23046373 (-)
G24816 NA non-coding upstream 178947 23133791 ~ 23134802 (-)
G24905 NA non-coding upstream 468769 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 708048 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 712530 23667374 ~ 23670082 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 377631 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 595639 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2481166 20462504 ~ 20472919 (-)
G24217 NA other downstream 2622274 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 2732081 20171329 ~ 20222004 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 452084 23406928 ~ 23420303 (-)
G25026 NA other upstream 1016827 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 1307846 24262690 ~ 24281564 (-)
G25422 NA other upstream 2309488 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2675948 25630792 ~ 25631592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034549 mex3b coding NC_007118.7 CM002891.2 12061787 ~ 12065668 (-)