G24824 (mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264)


Basic Information

Item Value
gene id G24824
gene name mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23189460 ~ 23193521 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31151
TCTCGGCTGTAATTCCAAAAAGGGAAAAGGTACTCCATATCATCATCTGggtattttgtgaaatgtgctgtatgcattaaacaaataaataagttatcCTCTGCAGACTAATAAGCACAGACTAAACTGACAGCAAAAAGTATgagaaacaacattttaatagttgAAATAAATACTCCAGTACATGCAtgatcaaaacacaataaaaatactAGTAAGTCTGGTAAATAGTGTAAAATCTCTAGTACACACTCACAGCAGCTTTTACCCTTTCacacatggaaaacaaacataacTGCCACTCTTCCCACTTTTACACAGCTGATTTTCTTCTATAGAACAAGATTTCATAGGTCAAAACAAGTGAAGCTACATCCATCAtttcatatgttgttttcaaatgtctGAAAACTGAGGTAAACTTTATAAAATTCATTATTTACTTACAAAGATGGGGCTAATGGTGAAAGTTAAAagcaatttagtttttcattttcttttcttttttgtggaaGTAAAGAGGCTTCAATCACATCCAGCGCGACAAAAAGCACTCATCTTATCATTTCAAATTATGTAGTAAACTCAGACCAGCTCCCATCACCAATAGCCTTCCACATTGCTTTTGCATTCTCTTATATGGTTAAAAAGGGTAAATCCAATAAAACTCTTTGGTATATAAAATTGTGATTAGGAGGTTAcgtttaattattgtaaaaggTTTTAATTCACAGAATGGGAGTTAACTGGCGGTAAAGTCCTGGGTGAAGATCTTTCCCTCAGTGCCTGAGACAGCAAGTTGCATCCATCAGAGACAGCACAGGCCGAGTTCCGTAATCGCTCCCTGTAGTCAGGCATCTTGGTGCTATTTTCTGGATGTTGGGCTATATCCCTGAGGCCTTGAGTCAGGAGAACACAAGCTGAAACGACACTCATTGCCCCACCAAGAACAGCAGTTTGCACTGCCTTCCCGTCAGGATTGATGGTGGCAGCTTTGCCCAAAAACTGAGGCTCAGTAGCAAAGCCCACCAAGGCATGTACAGACTGCACTAGAGGTCCGCTGAATAGCACACACCTGTTCCTTGTCAGTTCACTAGGAGAGGTTTTCACCTCCTTCACACAGGCCAAGAGGGCAGTTGCACTAGTACTCATGCACTTCACGCTAAGTTTGAACTGCTCCTTGCCAAACTTGTCCTTGGATTTATCACTGGCCAGTATGCATGCATCCGTCAGGGTCTTCAGGTTTTTGGAGATGTTCTGGGACACCTCGAGAAGGAGCTGGGGGGTCAGGTCTGCTAAAGGGGTGATTCTCAGAATGCTGCAGCTCTGCTCCACCTCGTGCCGGCACCGGGTCACTTTGTATCGATCCACTAGGCCAGGCAGAGCAGGCTGGGATCCCGGGGTCTCGACAGCAGCCAGATTGTCATTTAAGAGACCTGCTTGCACAAGAGCAGCAGGGTGTCTTTGCACCGTGCAGAAGGATCTGATCGAGCCCAGTCTGGCCGCCCTACAGTGCCTGGGAGGCGCCTGCATGCCTCGGACAATGCGACCACCACCAGAGCAGTTCCGACTGACCTCACCGGGATCGCCGGGCTTGTCCTGCACCATCATGCCATTAATCTGCCAAAATAAAAGCCTCCAATAAGAGAGCCAGCGAGCCCACTGCGGCGGTCCCTTTCTCGgcttttaatcttttctttttcatacaaAACCCAGTGATGTAAACTAGTTCTGTCTGCAGGTCCAGTCCCCTATGCATGTCTATTGTCCAAACGCCCTCCTTAGGAAAAAGCGGAGCATGATTTACTCCTCGTCCGGCGTTGGCTTTCGGTTTTGATGTCCATTTCAGAGGCGTCTTCCACTCGAAACATGGCCTGTTCTGGACTCCACCCCGCAACTTTTCCCACTCGTGTTTGACTTGCAAACTCCCTCTCGGAGAACTGGTCGTGATTGGGAATTGGAAGTGGGTTTCCAGGCTCCCGCTACATCTCCTGCACTATCAGGAAGCACAGGAGGGTGTGGCCGCACTTGGGGCTGCTGCTAGATTGTAACCCAGCCAGGCAACTGTAACTCACCCAAATACGGCAACTTTCAGATGGCTTGCAATCCCACTGATCGCGGTGAAATGAACGAATAGCACCATaaacgtgtattttgtttacgtGTGGGCGCAGTTCGCAGTTTGTTGGCCTTGGTGTTTATATTGTCCGCATTTCAAGGCACAGTGATCTCTCTGCCACAAGCCATCCCTTTCCGAGGCCCCGACGTGGGTGCATCCGACTACCGGCGTGGGGACAAAGTTACAGTCTTCCTCCTAATGAAGTCGCCTTCCCCAGCAGGACCGATCGCCCCGCTTCCATCCTCTTTACTGGCTCTTCTGATCCcttttggcttttttttaaatcgacAAGTTACCTATGAATCATGCCGCTGACgtttaaaaaaagcactttcTGCACATACTGTCACTGAAACACAGCTTTGCGATCTTAGTAAGCAGTGCCTTTGCTGTAACCCcagttaaaccaaaaaaaaagatgttgttGTGCGTTGACGCCTtagtccaaaaaaa

Function

NR:

description
PREDICTED: mesoderm development candidate 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31151 True 2572 TUCP 0.46 2 23189460 23193521

Neighbor

gene id symbol gene type direction distance location
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding upstream 57186 23116851 ~ 23132274 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 235942 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 268709 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 310208 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 336665 22790893 ~ 22852795 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 5631 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 194140 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 228495 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 499721 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 519662 23713183 ~ 23759994 (+)
G24793 NA non-coding upstream 234618 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 606306 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 726908 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 727997 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 729147 22459884 ~ 22460313 (+)
G24856 NA non-coding downstream 89167 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 212438 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 213463 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 651983 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 667161 23860682 ~ 23863793 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 49939 23133811 ~ 23139521 (+)
G24606 NA other upstream 906502 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 923051 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 985509 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 1054746 22131573 ~ 22134714 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 464329 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 998700 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1282966 24476487 ~ 24499650 (+)
G25822 NA other downstream 4890301 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 5245123 28438644 ~ 28454707 (+)

Expression


Co-expression Network