G24856


Basic Information

Item Value
gene id G24856
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23282688 ~ 23285015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31193
ttttcttttcataattcCATGCATCCTTTATTCCATTACAACCATTATGTTGCCGTTAAGCAACTAAACATCAATTTCATCAGTTTTACATCAATCTCAGtcttacagtacatttaaggctttttgatttaaataaaatctacacTAGTAGTGTGTGTACCCTATAAGTGTTCTgcattatatatgcatattgtGATTCCAGTGTCAAAGTCAAGTAAGCTAAAATACCCTTAAAtcatctgtttttatgtatagatatatatgtataaaaaaagttCAGCATAACACAAATGTGtaaatttattaataattactgAAAAAACCTTATACAAAATTTcggtataaaaaaaaaatgaggggactaaaaacacagcaaagtttgtcatttctaaaaaaaaatttataataataataataataataataataataatagggctTGATCAGTTTTCAAGCTACAGTTCACAGTTGATTATGGGGTTGATTAGAATGATTCACGGATATTCTTCATGTGAAAAGtcacagaatttaaaacaactaCATTCTAAGGGCGAACTGAAAGGCCTCCAGGCAAGTCACTTACTAGATGTTTTTATTGACTCAAATAAATTCCTAGGTGTGTAGAAGTCGGCTCAGGTTTTGTACAGTACAGATTGGGAACCAAGCAGATGCCTTACACTGAGATCAGGAAACTGGGACAATACATcataatttttttccccaaatctAACAAAAAGTCTATGAATGAGATCGACAAACAGCattcatgcatttcaaaaaccTTCCAATTAATTGAGATTAAAAGACAACATGTGAACATGGTTCTCCCTACACATACATTGCCACAGTTCTTGAACCATGAAACatgactatttaaaaaatctttatCTTCACCACtatgttgctttttgtttcaaattcaGGGGCCCTTTTCCACTTTGGTAAAGTTGTAGAGGGTGGATTTTGAGCAAGAAGTATGAGAGGGTAAATTTAACAGAAAAACTCTCATTGCACATTAGCATCTTTGTATCAccgaaagaaaacatttcagataaTGATTACTCATGATTGGAATTGAAGTCCTCCATCTGTAATCAATCAATCTAGTTAAGCAGAGTCTACTATAACAAGATAAACAGCCAGGAGCACCCGATATAATAAAAAGGGGGAACTAACTGATAAGGCCCTTTTCATagttttctttctatatttttttaaacagataaatttacacatttaatgttGGGTTATCCCAGTTACTTTAAAAGGAGATGCCAGCTGAACCCTTATTTCACTCGAGCACCAATTCTGCTGGAATTGGCTTCAGAAAGATCAAGCACCGTGCTTCAAAGTCTGCTTtgaaggacaaaataaaaataaaatcacctcCAATCCAACACTGAGAAAAATCCTGTTATGGAGGCTGGGAtccttgtttaaaataaaacaaataattagatAAAACTCATCACCACAACATTTTCCAGTTACAATACCACAGCTAGAAACTTCATACGCAAGGGTAGATTCCCAGAGCCTTAAAACCTGACGGGGTTACGGAGTCCAGAGTGAAAACCAGCCATGAAAGACTGGTGTAAGaaccagcttttatttttttatttttttcccctttaactataaaataataatacaataaaaaaataggaatgcaaaaacaattaaacaaagacaaataaccCATAGCCAAAGAACCTTCAAGTGATGTTACAAACACTTGCACTTGAAAAGTGCGTCAGTTGAGCAGTTATcctttagttattttaaaattggcAAGAcaagaggagggaaaaaaaaaaaaaattaatcagcAATTGAATATTGAGGtgcaattttttgttgttgatttcttCAGGTACAAAAGAATACAAAGTTATTATCACATTTAAACACACCCAAATCGTAGAGAGGGTGTTCTTCATAGTCCCCAGGCTATGAGAGGAATCCAGATAAAGCATGTGCAAATACAGGTCAGGTCTTCCCTCGGGTTAGGAGTAGTGTCGCCCGAGGGCCGTAAgtgctgctgcttcttcttcGTCCGGTCCTCCACGGGCTTCAGGAGTTTGGAAGTTCGAAGGATATGAACTGTTTTAGTCTCTCCAGGTACTGGGCGTAAAGTTCAATGTCATTGTGTCCAGCCCCCTCCACCCACAGGGGCTCCACCGCCCGGGGACAGCGCTCATAGATGGCCAGGCCATGGGAGAAATCGATCACCTCGTCTTCAGTGCCATGGATCACCAGGACTGGGGAAGCTACCTTGGACACTTTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31193 True 2289 lncRNA 0.36 2 23282688 23285015

Neighbor

gene id symbol gene type direction distance location
AMCG00007589 mesdc2,LOC107591313 coding upstream 79919 23199152 ~ 23202769 (+)
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding upstream 150414 23116851 ~ 23132274 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 329170 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 361937 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 403436 22857515 ~ 22879252 (+)
AMCG00007598 NA coding downstream 102646 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 137001 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 408227 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 428168 23713183 ~ 23759994 (+)
AMCG00007612 NA coding downstream 620188 23905203 ~ 23919949 (+)
G24793 NA non-coding upstream 327846 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 699534 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 820136 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 821225 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 822375 22459884 ~ 22460313 (+)
G24897 NA non-coding downstream 120944 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 121969 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 560489 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 575667 23860682 ~ 23863793 (+)
G25011 NA non-coding downstream 636905 23921920 ~ 23923225 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 89167 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 143167 23133811 ~ 23139521 (+)
G24606 NA other upstream 999730 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1016279 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 1078737 22189245 ~ 22203951 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 372835 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 907206 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1191472 24476487 ~ 24499650 (+)
G25822 NA other downstream 4798807 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 5153629 28438644 ~ 28454707 (+)

Expression


Co-expression Network