G24943


Basic Information

Item Value
gene id G24943
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23667374 ~ 23670082 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31296
TAGTATTAGAACTTCCCTTTTTTATTCACAGATTTGTACAGATACAAATTAGCAGACAGTGTGTTTTCaacatctttctttttgttttaaactgacaTTCAGCACTTGATGGCTTGGAAGACTCTGAAATTACAAGATAAACTATTTTCTGAAGTAGCAGAACTGTGACCTTTCTTACtgacaatttagttttttttttttccaacttttAGTCTTTCAAACTGTTGTTCATGTTATCAAAATTGAGTGAGTATTCCAACAGCTGAAAGGAATGGGCAATTTACAATGCGTATGATACAAAGGTATATGACAGAAGTGCTTCATAGTTTCAATTCATAGCATTTCAATGCTGACGATATCAttagataaaatgtatttctccaatcaaaaatcaaaagaaCAGAAGATGACGATGGTGACCTAATTCCCAGCATTCTCACAATTTCCAGGACACGTGGAGCAAGGAAcaattaaactgcatttgtaCGATTAGAAGAGATAGGAGCAGAGGAGGCAGCTGGATTTCATTACAATTTTCTTGGCTGGTATGGGCCAAAAATACAGGGACAATTTATGCTGTGCTGATCTGAAGAAAAATACTCAGTGTATTTATAAAAGGATTTCcaagtacattttataatttactgGAAGCACTTcatctaaaataacattaaacttcaataacacacaaacacttcacCCTTCTGCATTAGCACACACTGCTGCTAGATTAGGGAACACCAATCCCGGCATGGCTGCTCTCATGTGTCAGATACCTCAGTAACAGGAGCCTcacaatttagaaaataaatctattcgAGTCAGAACTACAATTTATACAAGGctagaaaactgaaaaaagccTTTGATTTTGTCAAGTCTTTAAAGACTTGATAAAGTCTTTAAATAccttatacattttcataattttgttaACTTTGTTAATTACTTTCGCAATTCCCTGTACCCCTTCTgagctttttaaagaaaaataataacataataaaaagcaTCAGTACATTAAAAGGAAAGATTAGTAAATAAACTATTGGGTTTAAATCATGTTTGTTGTTGCCATAAGAACAAAAAACTGCACTAAGTTTTAGTTCctggaaaaacataaaaatcagaTTCCATTCAGGTACTTTTGTCAAGGAAGAGAAAGGATGTCCAAGTACAGTTTTCAGCttcatgtaaataaatgtaacgtTTTTAGTCAAAAAAGTTTTggcaactaaaacaaaatcacaaaactcATAATACGGACATAATAGCAaacttttcaaaagtcaaagtTAAATTAAGCCAAAATAAAAGAtacaattagatttttttttaccactagTGTAGTAGGAAATGCTCAGAGAATGTTACTTTTTGAGTTATAGTTTGGTCTTAACACATAACCTACTTAAGGCATGTCATTTAGATGCAGATATTTTCTAGAACAGGTGCAGTCCCTTTTTGCTCTTCAGATGCAGCAAATACTGTTCTCTCGTAAAACTAAGGCTCCTAAATCCCACCTCACTGTGCCTATTCTGTCTGCAAGCAAAATGAAGAATTCCCATTCACTCGCCCTGGAACACAATAGTTTCTACCACTTCAAAGCCCTCAGCATTGCGCAAACAGACACTAAACAAGCCACATCAGAACAAACACAAGACCTTTCAACATTTTTCCATACACTTTGATAATAGTCAAGATATCgtagtttttaaataatcttaaaaaaatatctgctgtacatttataacacaaatatttacataaattatttgtatttattaatttattttctcgaGCGGCTTTAAACATTTTGTCAATACATGGCGATTGGTTCACTGCAAGATGCTTTCACGATtctacactgaacactgaaatgcatttctctcAGCGTTTTTCCTGTGTACATTTCCCATGTCTTGTTAATGCCAAGATTAAGTCTTTGCATGGCCTTTTTCCTATTATATTTATGGGGCAATAAGCAAAGAGTGTGGGTTTGTTTaaaagaactgaaaacaaaaccactccTTGCCATGGCATTTTTCTCTCCAAGTAACACAAACTTGGTCTCCGACAGTTTCAATAACGTTTCATTTATCAAAaggcaattaaataaattaaatggatcAAACAGCAGTGAAGACTGTACACAGTTGCATTGTATGAGACTTAATACCTTCCCTGGAATAATGGGTTTACTAAACACAGTGACTTGcaagttttaaatttaaatccaCCTTGTGGCAATGTGAAACCATTTTCTGGTTTCTATAATTTCAATTCAGACAAATTCACAGCTCTTCTTAAAGTACCTTAGAAAAGAGGGCATCTACATATGTATTATCTTTTTCAATACCCCAGCACATAAGTATCTGTAcctcatttaaaacatgaacatgttcagctttaacaaaaaaacaatggtaaCATTCTAAACTGATGACCCATTTGATCGCTTAAgtttatcaatacaaaaataatacctCCACTGATATGAATCTTTGAGAACTGCATTACTAGAAATATGCATTGTAACTGAGAAGGATTTTGTCCTAACTAAGCATAAGTATTTAAGGAATACCTTACAATTGTTCTTGTCATGGAGATTAAGGCTCGAAAGAgattcaaatgcaaaacatttcaataatatcAACTGGAACTGTTTAAGTGAAATCCAAATCCACAGAAAAATCGAATCAGAAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31296 True 2709 lncRNA 0.33 1 23667374 23670082

Neighbor

gene id symbol gene type direction distance location
AMCG00007600 NA coding downstream 9943 23652533 ~ 23657431 (-)
AMCG00007602 NA coding downstream 19965 23636442 ~ 23647409 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding downstream 45612 23603333 ~ 23621762 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding downstream 80197 23538929 ~ 23587177 (-)
AMCG00007599 LOC107562943 coding downstream 164455 23492555 ~ 23502919 (-)
AMCG00007611 chsy1,LOC107742304,LOC107755644,LOC107662251,LOC107691970,LOC107553812 coding upstream 102650 23772732 ~ 23781085 (-)
AMCG00007607 chsy1,LOC106587790,LOC106562599 coding upstream 148960 23819042 ~ 23821475 (-)
AMCG00007608 NA coding upstream 152409 23822491 ~ 23827715 (-)
AMCG00007610 snrpa1 coding upstream 161087 23831169 ~ 23834638 (-)
AMCG00007609 pcsk6,LOC107662249,LOC107742302 coding upstream 175510 23845592 ~ 23886667 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding downstream 3834 23662892 ~ 23663540 (-)
G24905 NA non-coding downstream 229857 23423613 ~ 23437517 (-)
G24816 NA non-coding downstream 532572 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 621001 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 712530 22954085 ~ 22954844 (-)
G24953 NA non-coding upstream 39426 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 42957 23713039 ~ 23713294 (-)
G25014 NA non-coding upstream 254157 23924239 ~ 23926237 (-)
G25019 NA non-coding upstream 284339 23954421 ~ 23955412 (-)
G25021 NA non-coding upstream 287898 23957980 ~ 23958182 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 247071 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1090920 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1308928 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3194455 20462504 ~ 20472919 (-)
G24217 NA other downstream 3335563 20331513 ~ 20331811 (-)
G25026 NA other upstream 301589 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 592608 24262690 ~ 24281564 (-)
G25422 NA other upstream 1594250 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1960710 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2383682 26053764 ~ 26070848 (-)

Expression


Co-expression Network