G24992 (pcsk6)


Basic Information

Item Value
gene id G24992
gene name pcsk6
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23845504 ~ 23851902 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31352
tacagatttgtttttatttatatatatatatatatatatatatatattttaatttgggtCTTACAAACATTggattttacagaaacaaaataaaaaaagacaaaccatAAAATTGTCTAAAATTTACAACAGAATTAATCTAGTCCATTGAACagctttctgtttctttttcttacaAAAGCTACAATCCTTTAACAAAATCCTTaaagcatatacatttttaaacgaTATTCAATTTTTAAAGTATGAAAAAGCTAACTTTACAagtactgtttatttataaaccaaTTCATACTGAAAGTTATGTTATTGATTCACACCTGAATACAGTGGTTCAAAAACTCATACACGGTCATTTATAGTCATAAAAAGCACCACATCTTTATAATTATGCAgcttggattaaaaaaaaaaaaaaaaaaaaaaaaatgttgtcatgTTATGTGTACAGTTTATAAAAATGGACagccttaaaaatatattttattcaaattaaaacatgcaccTTAAAGAATTCCTTTATTCAGTtgtagaaatgttttgttttgttttttcttacgGAAAGAAGTTTACCAGTTAAAAAATCTACAACATATCATGGAGTCAAAGTCTGAAAAGTGTCCATCACTCTCCCACTGGGCAATTAATCTTCATCCTGTCATTAAACACGTCCGGCAGCAGAACTGTCGAAAGAGCTTTTTCTCGCACAGCCGGTTGGATTTCACCATCTCACAGAACACCTCGTCAGCTGGTCGGCCATTATTACAGGTGGCATTCACAATGCATGTTCCACTGACTAAATTGTAGCCATCTTTGCATTTTAAGCAGTTCCTTCCAGGGCCATGGCAAATCAAACAATTATCTTCacatctggaaaacaaacaaattaagggATTGGTTtcctaaagaaaaggaaaaatgggACAACTTATATATAGCTGAGACTTGGGGACACAATTAAAACCCCAAAATGTAATGGCACCCTACATTTATACTCtcttattaaacaaaacataggCAGCCCTTTTAAACAtgtaaggaaaatgtattttgaaaagctgtctttttttcccataaagaggagaaacaggaccatttttcttatattttaagCTTGTTGAGAGTAATTAGCAGTATGatgtcaataaaaactgtaacatcATGACACAAATAAAAACCGTAACATCATgacatgaatattcatgaataTCCACATGCAGACAGGTTTTGTGACAGTGGGATGAACAGTATTAGGTCATTCACAGGACAGAGCCACATACAGCTATAGTCAGACACTGCTTTATTCACTGGGAAAAATGCAGGAGATCAACCTATGGAGAGCCACACATAAGGGGCAAAATGTATGACCCCATGGGTGATTTGAAAGTCAGCTCAAATCTACAGAATTTAAAGCAGGCCCCTTTTGATGTCAGCTTCTTTGCGTTGATTTAAATAGACGCAACACTTTGAGCTTCCATGCAACTCTCACTTGTTCGTTATTTACGTAAAGTATTCAATGTATTGTTGCCCTTTAATAAATAAcgtcaacaaaataaaactatactGTG

Function

symbol description
pcsk6 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PCSK6 (proprotein convertase subtilisin/kexin type 6).

NR:

description
PREDICTED: proprotein convertase subtilisin/kexin type 6 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31352 True 1568 lncRNA 0.33 3 23845504 23851902

Neighbor

gene id symbol gene type direction distance location
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding upstream 85510 23713183 ~ 23759994 (+)
AMCG00007605 aldh1a3,LOC106562593 coding upstream 136732 23693242 ~ 23708772 (+)
AMCG00007593 NA coding upstream 413783 23422016 ~ 23431721 (+)
AMCG00007598 NA coding upstream 457664 23387661 ~ 23387840 (+)
AMCG00007589 mesdc2,LOC107591313 coding upstream 642735 23199152 ~ 23202769 (+)
AMCG00007612 NA coding downstream 53301 23905203 ~ 23919949 (+)
AMCG00007614 NA coding downstream 90809 23942711 ~ 23960914 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding downstream 117939 23969841 ~ 23977600 (+)
AMCG00007617 NA coding downstream 127512 23979414 ~ 23985768 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding downstream 135844 23987746 ~ 23994665 (+)
G24898 NA non-coding upstream 420064 23406984 ~ 23425440 (+)
G24897 NA non-coding upstream 438667 23405959 ~ 23406837 (+)
G24856 NA non-coding upstream 560489 23282688 ~ 23285015 (+)
G24793 NA non-coding upstream 890662 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 1262350 22581469 ~ 22583154 (+)
G24997 NA non-coding downstream 8780 23860682 ~ 23863793 (+)
G25011 NA non-coding downstream 70018 23921920 ~ 23923225 (+)
G25013 NA non-coding downstream 72337 23924239 ~ 23926154 (+)
G25056 NA non-coding downstream 179132 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 193087 24044989 ~ 24046609 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 175425 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 651983 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 705983 23133811 ~ 23139521 (+)
G24606 NA other upstream 1562546 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1579095 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 340319 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 624585 24476487 ~ 24499650 (+)
G25822 NA other downstream 4231920 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4586742 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4830269 28682171 ~ 28700062 (+)

Expression


Co-expression Network