G25019


Basic Information

Item Value
gene id G25019
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23954421 ~ 23955412 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31383
GAGCGTTAATGTCACAGCCTGAGTCCAGGAGCACTTTCACACAATCATAGTGCCCGCCATCAGCCGAGAAATGCAGGGCTGTCAAACCATCCTGGAGGAGAGAGATCGCAGAGTGACATACTTACAGCACCATCCCAGCCCCTCTCTCGCTTAGCATCTAAATCATCTAATGACATTTGTTCCATCAGATTCACAGTAATTGACACAAAATTGTACAAAGAGCATGGGATGACTGCATTTCACAAGATAATAACTTAATTTCAGGATAATCTACTGCCTActgtaacccccccaccccctgctgtGGCACTGAAAGCTTCCTAAATGTGTGCCCTCTATTTCACTGCTATTATCCAGGGAATTAGGGTGGTGTGGGAGTCGCATTATCATTCAGTTtctcttgtaaaatgtaataatggaGAAGTTTTAGGATCAGTGAGAGCTCCTTCATTATTAATTTCGTAGTGCTGTGAAATTTCACCTCCAGGGCCTTACATCTAAAGCAATTGTAATATATGACAGAGTttaataactaactaaataaatacatgcagcCATAACATTTTAGAGAGTGTAATGGGCCGTGTGTCAGGCTGTTTATATATGTTAGATTATCAGCTGTACAGCTCAGATTTCTGCCTTGTGCTCATCTCTCCCTCAGATCATTCACAAACTTAAAGACCATGAAATGGGTCCATAATTCACTTGGTTTTTCTCATCCACGTCCACTCCCGTCTCCACAATCTTCTGCAGCACCTCTGAATACCCATTCTTGGCAGCTAGGTGCAAAGCCATGTTCTGCTCCTGTGTGGAAGACCGATCACAGtagtatattaattattacatGTACATATTTGCAAGTACCaacttttattaatttgtgccCCATTTTCCCATTCCACCTGTCTGGCAAGGACAATGGTGTGTTTAAGGGTGTCCTGATCTTGTCATTCACCCTCCTGAGGAACTTAATCTTTTGAGCTACAGAACCC

Function

NR:

description
PREDICTED: TBC1 domain family member 30-like

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU31383 True 992 lncRNA 0.42 1 23954421 23955412

Neighbor

gene id symbol gene type direction distance location
AMCG00007609 pcsk6,LOC107662249,LOC107742302 coding downstream 67754 23845592 ~ 23886667 (-)
AMCG00007610 snrpa1 coding downstream 119783 23831169 ~ 23834638 (-)
AMCG00007608 NA coding downstream 126706 23822491 ~ 23827715 (-)
AMCG00007607 chsy1,LOC106587790,LOC106562599 coding downstream 132946 23819042 ~ 23821475 (-)
AMCG00007611 chsy1,LOC107742304,LOC107755644,LOC107662251,LOC107691970,LOC107553812 coding downstream 173336 23772732 ~ 23781085 (-)
AMCG00007615 spg21,LOC107594761,LOC107685233 coding upstream 6555 23961967 ~ 23966643 (-)
AMCG00007628 NA coding upstream 41516 23996928 ~ 23997392 (-)
AMCG00007623 NA coding upstream 49427 24004839 ~ 24011628 (-)
AMCG00007627 LOC106587701 coding upstream 62053 24017465 ~ 24021945 (-)
AMCG00007626 NA coding upstream 67141 24022553 ~ 24030570 (-)
G25014 NA non-coding downstream 28184 23924239 ~ 23926237 (-)
G24955 NA non-coding downstream 241127 23713039 ~ 23713294 (-)
G24953 NA non-coding downstream 244326 23709508 ~ 23710095 (-)
G24943 NA non-coding downstream 284339 23667374 ~ 23670082 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding downstream 290881 23662892 ~ 23663540 (-)
G25021 NA non-coding upstream 2568 23957980 ~ 23958182 (-)
G25024 NA non-coding upstream 3064 23958476 ~ 23960843 (-)
G25058 NA non-coding upstream 75623 24031035 ~ 24031304 (-)
G25075 NA non-coding upstream 92248 24047660 ~ 24048480 (-)
G25076 mfap1,LOC102796914 non-coding upstream 93812 24049224 ~ 24049437 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 534118 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1377967 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1595975 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3481502 20462504 ~ 20472919 (-)
G24217 NA other downstream 3622610 20331513 ~ 20331811 (-)
G25026 NA other upstream 16259 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 307278 24262690 ~ 24281564 (-)
G25422 NA other upstream 1308920 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1675380 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2098352 26053764 ~ 26070848 (-)

Expression


Co-expression Network