G25069


Basic Information

Item Value
gene id G25069
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24044989 ~ 24046609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31444
AAACAGTCTCCACTTAGTGCTGCTGCATAATCACTCCACCCTCCtagatatatatttgtttctcacTTCTGCAGTCAGTGCTTCCTGTTGTAGAAGTCAAATTTGGCCAACAATGTTCAGAAGTCCTATGTTCGGCAGCTCTGCCAAGAATAAGTGACATGGATATAAACATGAAGGTTCTTTGCCTCGGCTGCTTTGCTGTGCTCATTGTTGGAGTTGGAGgcTTCCTTGAAGaagacaatgtattttatattgaagcCCTTGGATTTAGGATTCCAGGTCCATGTTTCTGGTACAGTCTGTTTGGTGTCTCTGTCTTCAATGGCTTCTGCCTCCTACTCATCATCTGTATTTATGGGGAGATCAAGAGAGGAACCAAACGACTACACCGCACAATGTACATCAGCAGACAGTAATCTCCCCACTCTGCAGCCTGGGAGAGGGCCACCACAGCCGGGAAAAGGAGAAGGggcatgtgtctgtgtctgtgtctgtggaggggaggggggtatcTTCAACAGAAGTCTGTGCAGaagtaaaatatgattttatggTAACTCTATAGAATCTTATAGAGTCAAAATGTGTGTTACCAACATCTTGTTAGGCCTACTTATAGTTTCTCaatccaaacacacaaactataGGCTACAGTGTAGGTAGGCTATTTAGAATAAGGTTTCCAAATCCAAGTTAAATATCTACACCActatttcttgttcttcttcatatcttgaaatgtttaaatatacaaaatctttatacatacattttttttaaaatcaataaatgcatttatataaaa

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
TU31444 True 805 lncRNA 0.40 3 24044989 24046609

Neighbor

gene id symbol gene type direction distance location
AMCG00007620 hddc3,LOC107757611 coding upstream 588 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 28376 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 37679 23997437 ~ 24007310 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 50324 23987746 ~ 23994665 (+)
AMCG00007617 NA coding upstream 59221 23979414 ~ 23985768 (+)
AMCG00007618 mfap1 coding downstream 1625 24048234 ~ 24051827 (+)
AMCG00007622 serinc4 coding downstream 9587 24056196 ~ 24077348 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 182913 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 209537 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 289952 24336561 ~ 24349947 (+)
G25056 NA non-coding upstream 13685 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 118835 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 121764 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 181196 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 193087 23845504 ~ 23851902 (+)
G25084 NA non-coding downstream 38798 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 103734 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 165073 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 182027 24228636 ~ 24228910 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding downstream 208181 24254790 ~ 24255913 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 374910 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 851468 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 905468 23133811 ~ 23139521 (+)
G24606 NA other upstream 1762031 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1778580 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 145612 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 429878 24476487 ~ 24499650 (+)
G25822 NA other downstream 4037213 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4392035 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4635562 28682171 ~ 28700062 (+)

Expression


Co-expression Network