G25103


Basic Information

Item Value
gene id G25103
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24150343 ~ 24153848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31480
CTCttttccagatattttatttggtACTGTtaaaagtttcatttttataCTGAAGGCACGCCAGGTAATGTGAAAACAGTGCAAAAGAACAAACGTATTTCTTAAGAATATAACTACATCCTATGGAGTGATACAAGGGAGACTTTTCCAGAACGCCTCAGGACTGCGGTACACTGGTCCGTCAGCTCATTGTGAACACCTTTGACAGAAAAATCAGATTACTGCCTGGAAGCCCAGCGAACCCAAACAACTGCAACACCTTGCAAACTTCACGTAGGGTGACACCTTGTGGCCTATAGTTGCAACTGCAGTCATTCTTGCTATAATACTGTACACGTATTGAAGTTTATGAATGGTTCTCAGCAAAATGGGTTGAACAGGAAAGATAAACAGTTTCTGCTTTGCAACAGTGATACAGTAATCCAGGCAATAATGTGGCATCAGTGAGGGGGCGGTAGTGTGAGCTGTGCACAATTTTTGTACAACTCAAGTCCCATTAGTTTAAACCCTTCTCAGCTATGAGGAGGACAGAGGAAACTGGTTTCCACTAAGTGGTAAGAATCCCACTCCCCTTTAAGTCATACATAGAAGTGTGgatgtttgcaaaaaaaaaaaaattaaatgttttaaattaagacagtactttatttatttgaagaaaacaagaaaggaCATGTAATCGCTCTGTACAGCACTGAACCGGCCAGCTCTGCCTTGATGCCTCTCTCAAAGACATGGAATGGACCAGCTGGATCAGCCCGTCAGTCCCCTGCACTGGATGGGGGCGATTTCCTATTCTAAAGAatctggtggggggggggggaatttcAGGGTATATAACCATTTGCATATTATCAAACAATGTTACACTAGATTTCAGAATTAATGATCCATCTCCTGAGCACACGAGATTAAACTTCTGTCCAGCTCTCTGGGTGTTCGTCCAGattcataaattcataaatataaaaggCCTGCAAAATGAACAGTTAAGAGTGTTTCTTAAAatagtttctttttcttttccaactCACACAATGTGgtgtcattttatatataatatgggtaaacaagcaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31480 True 1097 lncRNA 0.39 2 24150343 24153848

Neighbor

gene id symbol gene type direction distance location
AMCG00007622 serinc4 coding upstream 72995 24056196 ~ 24077348 (+)
AMCG00007618 mfap1 coding upstream 98516 24048234 ~ 24051827 (+)
AMCG00007620 hddc3,LOC107757611 coding upstream 105942 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 133730 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 143033 23997437 ~ 24007310 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 75674 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 102298 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 182713 24336561 ~ 24349947 (+)
AMCG00007638 NA coding downstream 295474 24449322 ~ 24461405 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 368617 24522465 ~ 24536808 (+)
G25084 NA non-coding upstream 63039 24085407 ~ 24087304 (+)
G25069 NA non-coding upstream 103734 24044989 ~ 24046609 (+)
G25056 NA non-coding upstream 119039 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 224189 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 227118 23921920 ~ 23923225 (+)
G25134 NA non-coding downstream 57834 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 74788 24228636 ~ 24228910 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding downstream 100942 24254790 ~ 24255913 (+)
G25196 NA non-coding downstream 287449 24441297 ~ 24469767 (+)
G25197 LOC105908101 non-coding downstream 317191 24471039 ~ 24473147 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 480264 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 956822 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1010822 23133811 ~ 23139521 (+)
G24606 NA other upstream 1867385 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1883934 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 38373 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 322639 24476487 ~ 24499650 (+)
G25822 NA other downstream 3929974 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4284796 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4528323 28682171 ~ 28700062 (+)

Expression


Co-expression Network