G25176


Basic Information

Item Value
gene id G25176
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24350030 ~ 24354310 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31570
ttggtgATCACCAGGCTGTTTCCCTTTTACAATAAATTTGCAGTAgttctatttctttattttagatttaaagaGAGATACAGAATATTGCACACAAAATATCTGAGGAACTAAAAGATTAATACAGCGCAAAAAAGAATAACTATCACAGCGCCTTCTTTACAATAGCCCACGGCGAAAAGAAAAGCGCGGCCAGGTAACATGTGCCATTTCAGTACCATTAAGacaatttgcttattttttttaatatattttttaaaatagtattttaattccttttaaaCTATTACATACAGGATTATAACTTATAAGAGATCACATGCAGAAACAAGCAAGGCTCATTTGAATGATCCGTATGTTTTTTTACCATTGATGATTTCAGGGAGAACgttttggaaaatgaaattTGAAAGAAGTGTTGCTGTATTTGCacagcacatttattattatttttttcaattttgtttatttctttttatagaAAAATGCATCACTTGTGAGATAAAATCTGCTAAAAatgacttgtttttcttttgtttgtgtgtgtgtttttatttagaagGATCAGATCCGGCAGTCTGGTCTGTATGTTGTGTTTAGACcgatttgtgtttgtcttttgatTTTCAGTATAATTTCTGTTCATAGTGTAATTCAGATGGAGGCAATGTTGCAATCCTAGTGAACACCCGGGTGCTTTTCTATTTCGTTTTGTTGTTTCAGGGGGGGAAGGTGAAGAAACTTCTCCTTTTAAAAGTTTGAACTTTTTctcaagtttaaaaaacaaacaactactACAAAGTAAAGAGTATCTGCACACAAACAGCAAGAGCACTGAAGATTATTGTAGATCACATTCTTGCATGCCTGCCCCTTAGCTGGGACTGGGTCTTCATTTCTCCTCTGTAATCTGCATTTCTATTCATTTTCTTCAcctattactttttttgtttttgttttgttttttatggttttactTCTTTAGTTACAGCAGCTTTTAGAGTTACAAACTCtacaaagacattcaaaaatgttatttcaagtTAGTGCATTTGCTTCTAATACTAGGCTAGGTTTTGTTACATTTGTCTATtcaatgttttagttttgattGTATTAATTCAAGAACTGACTgacatatttagtttaatttgggCATCCATAGCTGACAGCTAAGGCCTCTGGGTGCCTGTTGCTAAGGACAGGTAGGGATCTAGCTAACTGGATACACCACAACAGAACTACCATCTCTAGAGACATGAAGCAGACAGAAGacgaaacaaaacaactgaCTATTTTAGTACTCTAAAACAAACGGAAAGAAACTTCTcagttaaatgtaaattatagtTGTACTATAAAAACTGACTCTGGTCTGGCTCTTGACTTCTGTCTATAGGGggataaaaacatgatttcaagCTTTCAAGACACTCAGAGAGGGCTTCTGATACAAATCTGTCAATGTTAAATTCTCCCTCAACAggccaacaaacacaaaatgcccTCAATAGGGTACAGGATCTTGTTCTTGATTTAATAGCGCCAACATCACCGTTAGGCCCGAAAGCATCTCCTTTGGGTCTCCATGACAACGAGACCTACACCACTTTCAAGCCCCCTCCCCCAGAGCCCATTCTTGTGCGTGGATAGctatttaatatacattgaaaagAACTGCtgccaaaaatacacaaatagcaGCACCCCCAAGCATGGATAGCTCCTAGTTTGTAGAAGCTATGTAGATGTAATCTACAGGACGGcttctttcagtttattttacaggTATGTAATGTTTTCATCCGAAGATGAAATCTATAGATTGCATGCATGTAAAGGCTAGCACTGTATATCTTACACAAAGAGCAAGAATGAGCTAAATAATGAATTCCACCTCCTTCTCTGGCTGATCCCACTGCAGAGCTACCCAATCTGAGGGCGGACTGGGCCCGGGCCCGATGGCTAACTGGACAGGAGCTTCTTACTATGTTTGGCTATTTTCTCTGGATATTAAAGATCTCAATGGCACTATTTCATATAGGAGCAGGGTTGCCAGTCCTGGTTATATCCCAATATGTGTTAACCAATCCCACTTCACATTGGGAAGTCCAGAACTCCACAAAGAACCGAGGAGGACAACCCTGATAAGTGAGATGCTGGGCCTAAATTGGATCAATTCTACATAACATATTCTAGAAACTGATTAGCAGAGTTTAGAAGAGAGCCACTCTCTTTTTGCTGCTTGGCGCTCACAGTGACACAGACCCCCAATAGACCCTGTCAAACCTGCCAGGTGTTTTCCCTGATTCTCAAACAATCTTTTGTTCGCTATATATTATGCAGCATTTTAAACAGAATACCTTCATAGGACAATCACTTGACATGAACAATAAATATCTAGAAGAACCCACTCTTTTTCAAAAGAGGCTCCGGTCTTTCATTCTGCTTCCCCAAAGTTGCCTCGACACACAATCACCAGGGAAATGTAAACAACGAGTCACCTCTGATTAGTGCTATAGTACTCGGGATGTTTCAAAACAATatgaatcataaaaaaaaaagataatactGTCAATATTAAAGCATCTTTacaacatcaaaaataaatataaaaaaggaaaagaaaaaaaacaataatgcaaatacataaacagtttgttaaaaaataatctacaaGCAATTTGCCAAaccattcaaaatatataaaccttttCAGTGGTCCTAACTATACTGTGGGGGTAAACACAGCCCATCCTATTCTGgatgcacaaacacagcaggcctgcccccccccacactgcaATGCCATTCGACCTTCCCACTCAATTGACCATCACCTAATTTCCTTCTGCCGTGCAGGTCTATGTGTATGAGAGCCCAGTAGAGGTACACTGTTCCTTAGCTAACAAGACCCAAACGTAGAAATGTAGCTTCATTTCCAATTTCATATTTCACCATCCAGGGTTGTAAATGACCATTTATCAGATGATAAGTGTAAACCATTTGCACAGCTTCTGCAGAGGAATAAAGGGTAAGTATCCACAGGTTTGACAGgcatgattttttaaattaaaacaaaacaaaatgtaaacatgttgtTAATCAAAGCGCTGAAATGGACGTGGGTTGCTTGCCTTTTAAAAATGGTCATTTGCATCCCCTAAATTTATGTGCTTTTGACAATGTTTCCCTTGCTACCatactgttattttaaatgcttacaaaaaaaaagtgcagtttCACTTGGTGATACATATTTGTTTGATCAGATGCAACCTTTAATCTTTTCCCCTTTGACTGCTGGCTCAGTGGGCCCTTCACACTGCTATCCTCGTCAGGCCTACCTACCCAGCGTCTGTCTGTATGAAGGATCCCCTCCGAAACCAGGCTCCCCCCCAATTCAACCTGACTAGAACCTCAAGGCACATGTGGGTGACAGTCGCACCTTCCCATCCTCACAACGTAAACACACTCACAATGTCCCTTTCTGTCATCTCAGGAGCATGTCCCACAGAGACCCCGCACAGTCTCAGTTGGCGGAAGAGTCTATTCAATGACACATCTATTTTCTACCAGAGAAATACAATTCAGTCAGGTTTTCAGAGCATTCCCACACAACGGCAAATAGATTCTATTGCTACGTCTGCAACGCTGGCAAGTGCATAAGCCCTAGCACCCCACCGCGTCTTCACGCCAGGGAACAACGCTAGGAAAAATCTTGAAATATTCAAATCAGGCTTCTGGCTCACGGAGTATCATTGGAAAACACAGATTGctcaaaataaaagaacaaatagCACAAATatagaataattattattattattattattattattattattattattattatctctgttttatttgtttttgtttttccagtgttACTCAATGGGGgggtaattattttttaataaaaagtagAACAAGAGGTTAGttcttatttttgtgaaaataacGTTATTCGGCTacagcagcatttaaaaaaagatgtttttttgttctttttgttctgtttttccatttttatatatgtatatatatgtatatatatatatatatatatatatataatatcagaTTTGTCTATTTTAACACTTGACAGTCTCCAACTAACAAGCCCAAACAGTGTAAATCCATTGATCGGAAAAGAGGAAAAATGTACAGGAGAGGGCAGATTTAGAGCAGCTATACTGGCAACTCCTGGGCCCTTAGTAAGCCAAGGTAATTACCGAGAGTTTGCGAAAGGCTTCACCCTTGTATTATTACTTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31570 True 4281 lncRNA 0.38 1 24350030 24354310

Neighbor

gene id symbol gene type direction distance location
AMCG00007634 NA coding downstream 93989 24251466 ~ 24256041 (-)
AMCG00007635 iqgap1,LOC106562619,LOC107730269 coding downstream 163140 24150344 ~ 24186890 (-)
AMCG00007630 crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420 coding downstream 202009 24114555 ~ 24148021 (-)
AMCG00007629 NA coding downstream 249357 24078152 ~ 24100673 (-)
AMCG00007625 NA coding downstream 294940 24052472 ~ 24055090 (-)
AMCG00007644 ppip5k1,LOC105015023 coding upstream 14321 24368631 ~ 24403122 (-)
AMCG00007648 NA coding upstream 109417 24463727 ~ 24464347 (-)
AMCG00007643 NA coding upstream 116725 24471035 ~ 24479836 (-)
AMCG00007645 NA coding upstream 129702 24484012 ~ 24495209 (-)
AMCG00007647 rlbp1 coding upstream 192222 24546532 ~ 24550224 (-)
G25175 NA non-coding downstream 2611 24347099 ~ 24347419 (-)
G25079 mfap1 non-coding downstream 299594 24050148 ~ 24050436 (-)
G25078 NA non-coding downstream 299957 24049815 ~ 24050073 (-)
G25077 NA non-coding downstream 300246 24049553 ~ 24049784 (-)
G25076 mfap1,LOC102796914 non-coding downstream 300593 24049224 ~ 24049437 (-)
G25177 NA non-coding upstream 13859 24368169 ~ 24368373 (-)
G25239 NA non-coding upstream 78770 24433080 ~ 24507819 (-)
G25248 NA non-coding upstream 144055 24498365 ~ 24542158 (-)
G25375 NA non-coding upstream 627624 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 634535 24988845 ~ 24989054 (-)
AMCG00007637 NA other downstream 68466 24262690 ~ 24281564 (-)
G25026 NA other downstream 377365 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 929727 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1773576 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1991584 22340599 ~ 22358446 (-)
G25422 NA other upstream 910022 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1276482 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1699454 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 3003421 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4540383 28894693 ~ 28921123 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) map1ab LOC106584644 misc NC_050570.1 CM025857.1 8169504 ~ 8265239 (+)