G25196


Basic Information

Item Value
gene id G25196
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24441297 ~ 24469767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31598
TGTATAGTATCAACCACCTCCAACCGCACACTACACAAGAGATCTGTCAGAAGTCGATCAAAACCAAGCAGCAGATCTTGGGGAAAACTCCGCTAAAAATGGGAGAAAGGGATTTATAAAGAAGAAAGATTAAGagaaagataattattttaaagaacatttatataaaaagagTAATTTTACTGTCTGAAAAAAAAGAGATTATAAAGTAAGAGTGCCCATCTTGTATATACAAACACCAAAGCAAGCTAGACCTAATTCTGTAGTCCATCTGGCTGATGTATTGGTTTCAAAGTTTCACTCTGTGCCTTGTTTTAGGGGGATAAAATAAgagatgattttattttgttgttgttgttcttgtgcCAAACACACTGTAATAGTTTAATGATTCctattgttcattttaatttgtgctcTAATTGGATTTTGAGACGTCAGACCAACCGTAGTTTTATCCAGTCTGTGAGTTAGGATGTTGAACCTATTTTCAGGTCGTTTGCAGGGCACCTATAAGCCACTTCACCCATATTGGAGTGTGCCCTCAACAGCTGGATAAAAACAGCAGCATTCTTTGATCGCTCATGGTTTGCTTTCCAGACACCTGCTGGAGAGATACATTTTCCTGAAAACCAGGTGTAAATATTTCATCCAGGCCAGCTGGTATGATTTACAATGTATCGGCACTAAACTATAAAAACCCAAGCTGTGTCACAGAAGTCCAAAGAGAGGTCATCGTCTCAGCTCAGTTCCTTGTCAATGATACAAAAAAGGTGCCAAATTGTAGCCTGCATGCAAAATACACTGAGGGATTGTAAGGGCTTGCCTTCTTCCACTAGAGTCTTCTGTTACAGGGAGCAGAGGGCCAGTGTAGTGCACAACACAGATAATTCAGATATTTCGATTGCATATTTAGCTAATTGTGGATCCACCAAATTTAACACAGCATAGGAACTGGGTAAGGGATAGTGCATGACAGGAACTCTAAAATAACCAGTCAAATCAATCAGGACatgtgtttgtaatgtaatCTGCATACAGGGGGATCTTAGACCCAGTATATTCAGATCCAGGCATGGAGAACCAGAGAACTCAATACAATGAACACGGGGGCTTACATCCTATTGactaatcttgtttttttctgggggAAGGTAGGTctaaaaaatgtgaatatagAATTATTTATTGATCCTTCATAGTGCCAGGACCTGACTGGCACATGGACTGGCAGAGCATCCTGCAATCCACTGAGCCTGGCACACTCCACTATGGGAGGAGGGTTAATTCTCTCCTCAAGGCACTGGAGTGGCATGGAACATCGCTGCCAATCAATTTTAGGAAGACAAAACACAAGGTATTTCTGGCAACCATAGGATCCTAGTATTcatgtactttgtttttgttttgtttttattttgcgttgtcattttcatttttaattaagcaaaatataACTAGATTTTTCTAAATATCGCCTGTGACAGTTTCCCTCCCTCAGGGCTGTGCAGTGCACAGGGTTTCTGTGGGATCAGTACAAGGGTGGCAAACCTGCTTACAGCAACTGTTCTCTTGCTTTTTTCTAGTCTGACGATCTTAGTAAAACAGCACACCTCAGGAAATCATGCAAATTCATAATAACAGAGCAAACTTCACTCCAGTAGTCTATTgctttgtaatatatacaggGTTGAAATATCAGGAGCCTTAGAAGGGTCCAAAGTCCACCTAAACAGGAGTATCCAGCCCTAATGTCTTTGTGAGTCTGTAGTCTATAAGGAGGTGGTGCCCCCCAATCCTTCATGAACATTCTGTACTCCACATTGCTCTAACCCTGGATACCTTTGGAGCAAtgaaaatatgttcaaatgaaGAAGAGATTAGGAGAAACCTAAGGGAAATTCCATGAGTAGCAGATACTCCTGGCACTTTTTTTAGGGAAGTTAATGGCATCATTCCTTCCAGAGTACGATTCCCAGTTTAACACTGGCGCCTGTTTACCTCAGAATCAGCTGGGAAATGCAGTGAGGTGTTAGTTTCATTGAGGTAAGTCACAAGTCTGATAGCAGATGCTGTATACTTGAATGCCTACAACAGCGAAGCGCGCTTTAAGATATTTTAACCctatatatatagaatgtatttgtgaaaactGGTAGACATGTTAATATTAATCCTGTGAAAGTCCTCTCTTGCAGTTGTGTTAGTGTACCTTGATGTTGATATTGACGTCCTTCATAGGCCTCTTGAAAAGAAAGCTCAAATGAATGGAGCTTTTGTGACATTGACTAAGGGCTCTCCAATTCATTTCTGGTGacaaacattaaatgaaagCCTCCATTTAGCCTTTAGGACCCACCATAAATTATAGTGGATAACGGCAATTTTTAAGCTTACTTTCTAGAGCCTAGAACAAACTGAATTCTGAGTTGCTCTGTACTGCAAACTGACATAAGACAACTTGTGTCCTCACCATCCATGTAAAGGGCTTTATGCTCACCTAATCACTGCAGCCCTCGCTGGGATCAGCAGGAGTCCCCAAAGGCCAGACACAAGCTCCTTATTGAAAAGCTAAAATGTTTGGAGAATTTTGCTTAATTGTGAGTATCAACCAATATTTTTAGCTGGCATGATACATAACTACTTAAAGAATCTAACTGTTGGGAAATTGGAGGTACGGAAATGTTtccattaaacatatttaaacaaaaaagtcgTTATACTGACCATGTATAATGCTGATGATTGTATTTGGCAACGCGATGTGCTTTGACATTCGATACACCTCAGCTGAATGGTTTACCTCCAAGGTGTACAAAGACTTATCGTGTGAGTATCAAGCTCAGAACAGACCCTTTGGTTCAGTGCAGAACACAGGCAGTCCAGCACAGGGAACATCTGGACCGGAACATCTGTGGGACCGAAACCAGAGGCGATGTGTTCTAGATTTACAAAGCACAAAGCAGGCCTGGTGGCAGCAGTGCTTTGATTAGAGAAGGCTGTCGCCTAGCAGCtacagtgcaatacatgttcttGACAATGGGGTGTTATAAAGCACTCCTGCCTATGGATTTAACATCATTCTTTATGCACATTAGTATTCACTTGCATTGCACATAGATCAGCAGTAGTGGCATTtgcctgtatttttttataattgaatttcatgttttaaactcCTTGGTAACACACAATAGGACAAAGCCAGGAAACAGTTGCTGTGATATAGAGTGCACATcctttcatttttgtgttaatCATGTGACACAGAGCCTGTGTTTATCAGTGGTCTACAGCATGCCAATGTACCCCAGAATTATCAAAAGAAACAATgtctgttttcaaatatttgtatttcgaTTTGCTCAGAGATCATGAAGAATGCTAAATAAAAcgtatgtattttattcctgGTAGGACTTTAGCTTTATGTGTGCATGGGCACAGGAGAATGTTTACAtgattgtgcgtgtgtgtgtgtcgctgaCTGTTTGCACAAACACCCTTTtgtttgtgcatgtttgtgtctgtgaccggttacagaacaaaaaatagaaaagaaaacatgtaaatggtAAGTATGTGTGATGAATTCAAAGAGAGTATTTtccaacaaaatgtattgttacaaAGCTACAAatgatataaattatatatatattgaaatattttaatatgtacacATTAAAAGTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31598 True 3696 lncRNA 0.39 2 24441297 24469767

Neighbor

gene id symbol gene type direction distance location
AMCG00007636 map1a,LOC106584644 coding upstream 91350 24336561 ~ 24349947 (+)
AMCG00007632 tubgcp4,LOC107695351 coding upstream 179398 24256146 ~ 24261899 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding upstream 210712 24229522 ~ 24230585 (+)
AMCG00007622 serinc4 coding upstream 363949 24056196 ~ 24077348 (+)
AMCG00007618 mfap1 coding upstream 389470 24048234 ~ 24051827 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 52698 24522465 ~ 24536808 (+)
AMCG00007639 NA coding downstream 103119 24572886 ~ 24574030 (+)
AMCG00007650 NA coding downstream 109364 24579131 ~ 24586370 (+)
AMCG00007649 NA coding downstream 123529 24593296 ~ 24620644 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 224755 24694522 ~ 24704573 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 185384 24254790 ~ 24255913 (+)
G25138 NA non-coding upstream 212387 24228636 ~ 24228910 (+)
G25134 NA non-coding upstream 227853 24211682 ~ 24213444 (+)
G25103 NA non-coding upstream 287449 24150343 ~ 24153848 (+)
G25084 NA non-coding upstream 353993 24085407 ~ 24087304 (+)
G25197 LOC105908101 non-coding downstream 1272 24471039 ~ 24473147 (+)
G25203 LOC105015055 non-coding downstream 14519 24484286 ~ 24490748 (+)
G25209 NA non-coding downstream 84501 24554268 ~ 24564852 (+)
G25300 NA non-coding downstream 347575 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 409598 24879365 ~ 24911371 (+)
AMCG00007631 NA other upstream 246816 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 771218 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1247776 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1301776 23133811 ~ 23139521 (+)
G24606 NA other upstream 2158339 22281700 ~ 22282958 (+)
AMCG00007640 NA other downstream 6720 24476487 ~ 24499650 (+)
G25822 NA other downstream 3614055 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3968877 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4212404 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4430291 28900058 ~ 28911566 (+)

Expression


Co-expression Network